Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1200 ATGGCTCCTGGAGGCGGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGCTGTCTTCAGATTATGAAACAGGCAAAGCTAAATCTGAGGCCAAGAGTTCCAGTACATTTCCAAAATCTAGTGTTGGGTCGACTGGAAAGAATGAAATTAGTTCAAAGAATGGCGTGTATGACTTACTCAAGTGTCCTGTCTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCAATTGTAAGATTGAAGTCCATAATATCTGCCCAACCTGCGACCATGATCTTGAGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCTTTGGAGCTTCCTTGCAAATATCAGAGCCTAGGTTGTCATGATATATTCCCATACTATACTAAGCTTAAGCATGAGCAGAGTTGTGGATTTCGTCCATACAATTGCCCATATGCTGGATCTGAGTGCTCTGTGATGGGTGACCTTCCTACTCTCCTTGCCCATCTAAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAATCAAATCCACATGAAGTTGAGAATGCCACATGGATGCTAACTATTTTTAATAGTTTTGGGAGACACTTCTGCTTGCACTTTGAGGCATTCCAGATTGGCACAGCTCCAGTTTACATGGCCTTTTTGCGGTTTATGGGTGAGGACAGTGAAGCAAAGAAATTCAGCTACAGCTTGGAAGTTGGCGCAAATGGCCGCAAGCTTACATGGCAAGGAATTCCGAGGAGCATTCGTGACAGTCATCGGAAAGTTCGAGATAGTCAAGATGGTCTTATAATTCAGAGGAACCTTGGCCTTTATTTTTCTGGTGGGGATAGACAGGAGTTGAAGCTGAGAATCACAGGTCGTATATGGAAAGAAGAATGA 930 0.429 MAPGGGVFKEVLESHLLSSDYETGKAKSEAKSSSTFPKSSVGSTGKNEISSKNGVYDLLKCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNICPTCDHDLENIRCLALEKVAESLELPCKYQSLGCHDIFPYYTKLKHEQSCGFRPYNCPYAGSECSVMGDLPTLLAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTIFNSFGRHFCLHFEAFQIGTAPVYMAFLRFMGEDSEAKKFSYSLEVGANGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRNLGLYFSGGDRQELKLRITGRIWKEE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1200 309 SUPERFAMILY RING/U-box 51 102 - -
Lja1g1200 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Lja1g1200 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 115 IPR013083 -
Lja1g1200 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
Lja1g1200 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Lja1g1200 309 CDD RING-HC_SIAHs 59 96 - -
Lja1g1200 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 302 IPR008974 GO:0005515
Lja1g1200 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Lja1g1200 309 SUPERFAMILY TRAF domain-like 114 306 - -
Lja1g1200 309 MobiDBLite consensus disorder prediction 28 47 - -
Lja1g1200 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja1g1200 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1200 Lja-Chr1 12361080 12365815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1200 1 309 C3H Transcription Factor Family AT2G41980 78.317 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1200 K04506 - gmx:100813966 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1200 1 12361080 12365815 Lja1g1200 1 12361080 12365815 ECH