Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1185 ATGGCTAAAGAAGGAGTTGTTCTTCCATATTCAACAGGTAGATGGGCATACGACGTGTTCCTGAATTTCAGAGGAGCGGATACTCGTGATGGATTTACAAGCGTTCTCTACAAATCTCTGAAAGAAAGAGGAATCCGAACCTTCTTCGATGACGATGAGCTTTCAAGAGGGAAAGAGATCAAGTCCTCCCTCCTCAGAGCCATCGAAGAATCCATGATTGGCATAGTGATATTTTCACCAAACTACGCTTTCTCAGCTTATTGCTTGGATGAACTTGTCCACATCTTAGATTGCTGCAAGGGTCACGATCGGTTGGTTTTGCCAGTGTTCGTGGATGTGGATCCTTCACATGTAAGGTATCAGGTAGGGACTTATGGTGATGCCATGGCCAAGCATGAAGACCACCACCGCGTTGACCAACCCAAACTGCAAAAATGGAGACAGGCTTTAGCTGATGCAGCTGATTTGTCTGGCTGGCATATCCAACAAGGGTCTAAGTCTGAATTTACCTTTATTCGAAAGATTATTGGAGAGGTTTCCAGAAGAATCAATCGCAACCATCTGCATAATATTGGTAACCACCTAGTTGGACTGGAATCTCGGGTGCATGATGTAACAACACTTCTTGAGTTGGAGTCTGACCAGAAAACCATCATGGTAGGGATTTGTGGATTAGGTGGAATAGGAAAAACAACACTTGCTCAAGCTGTATTTTGTTCGATTTCTGGTCAGTTTGAAGGCATATGTTTTCTTGCTGATGTTAGCCAGAAATCGCATGACCTTGGCCTAGTCAGACTGCAGGAGACACTCCTTTCTGATTTAGTTGATGAGAAGAACATCAAGTTTACAGATCCAAGGGAAATAATTCCGACAATAAAACACAGGCTCCGGCAAAAGAAAGTTCTTTTGATTCTTGATGATGTTTGGGATATGGTAGAGTTGGAGTCATTAGCTGGAGATTGTGATTGGTTTGGTTCCGGTAGCAGAGTGATTATAACCTCAAGGAACACACATTTGCTTAATTCCCATGGTGTTGACAGACAATATAAACTCCAGACATTGAATGAAGAAGAAGCTTTTGAGTTATTTTGTTGGAAGGCCTTTGAAAATAAAGAAGCAAATCCAATTTATATGGAACTATCAAAAAGTGTAGCGAGTTATTCCCTTGGAATTCCACTGGTTTTGGAATTGGTTGGTTCTGACTTGTTTGATAAGCCAATTGCTGAATGGGAATCTCTCTTGGACAAATACAAAAGATATGATCCAAGAGATATTCCAGGGCTCCTAATGATCAGCTACCAAAATTTGGATGATGATGTGAAAACAATCTTCCTTGACATAGCATGTTGCTTCAATGGTTACAAAGTGGAATATCTTACTGATTTGTTGTTAAATGGTCGTGGTTTCTCTCCAAAATACGCTTTACAAGTGTTGATTTCCAAATCATACATAAAGATAGAAGACGGTGTTGTTAGAATGCATGACTTGGTGCAAGACATGGGTAGGGCATTTAATCACAGGGAATCACGTTCACAGCCTGGTAACAGCAAAAGATTATGGTTCTATCAAGATATTCTCAATGTTCTTAATAACAATATGGGAGGTCCTGCTGTTGAAATCATGAAGATTGACTTGCCTAAACATGAAGAAGTGATTTGGGATGGAAATGGTTTCAAGAATCTGGAAAACCTCAAAATTCTTGAAATTATAAATGCACGCTTTTCAGAAGTTCCCAAGATCTTCCCAGATGATTTGAGAGTGCTGAATTGGAAAGGATACTTCAAGGGAGCAAACTACAAGAATCAACATAGTGGGAATACTTCTGGTTGTTGCAATATACTTTAG 1845 0.4022 MAKEGVVLPYSTGRWAYDVFLNFRGADTRDGFTSVLYKSLKERGIRTFFDDDELSRGKEIKSSLLRAIEESMIGIVIFSPNYAFSAYCLDELVHILDCCKGHDRLVLPVFVDVDPSHVRYQVGTYGDAMAKHEDHHRVDQPKLQKWRQALADAADLSGWHIQQGSKSEFTFIRKIIGEVSRRINRNHLHNIGNHLVGLESRVHDVTTLLELESDQKTIMVGICGLGGIGKTTLAQAVFCSISGQFEGICFLADVSQKSHDLGLVRLQETLLSDLVDEKNIKFTDPREIIPTIKHRLRQKKVLLILDDVWDMVELESLAGDCDWFGSGSRVIITSRNTHLLNSHGVDRQYKLQTLNEEEAFELFCWKAFENKEANPIYMELSKSVASYSLGIPLVLELVGSDLFDKPIAEWESLLDKYKRYDPRDIPGLLMISYQNLDDDVKTIFLDIACCFNGYKVEYLTDLLLNGRGFSPKYALQVLISKSYIKIEDGVVRMHDLVQDMGRAFNHRESRSQPGNSKRLWFYQDILNVLNNNMGGPAVEIMKIDLPKHEEVIWDGNGFKNLENLKILEIINARFSEVPKIFPDDLRVLNWKGYFKGANYKNQHSGNTSGCCNIL* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1185 614 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Lja1g1185 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 447 IPR027417 -
Lja1g1185 614 Gene3D - 182 347 IPR027417 -
Lja1g1185 614 Gene3D - 353 437 IPR042197 -
Lja1g1185 614 Pfam NB-ARC domain 202 418 IPR002182 GO:0043531
Lja1g1185 614 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Lja1g1185 614 SMART till_3 16 156 IPR000157 GO:0007165
Lja1g1185 614 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 596 IPR044974 GO:0006952
Lja1g1185 614 Pfam TIR domain 16 181 IPR000157 GO:0007165
Lja1g1185 614 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
Lja1g1185 614 PRINTS Disease resistance protein signature 295 309 - -
Lja1g1185 614 PRINTS Disease resistance protein signature 219 234 - -
Lja1g1185 614 PRINTS Disease resistance protein signature 388 402 - -
Lja1g1185 614 PRINTS Disease resistance protein signature 559 575 - -
Lja1g1185 614 PANTHER ARCHAEAL ATPASE 27 596 - -
Lja1g1185 614 Gene3D - 10 181 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1185 Lja-Chr1 12128720 12131518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1185 4 593 WRKY Transcription Factor Family AT4G12020 28.856 1.89e-57 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1185 - - lja:Lj0g3v0104929.1 674.085