Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1177 ATGAAGCACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGAACTATTTCAAGAGTTCAGAGTCAGATACAAGTTCTTCTTCCAAAGAACTCTCTGTGAATTCTGAGTCTCGAGATATTTCAAAATCCAGCTCTAGGTGGCATGCAATTCTCCAATTGCTGAGGACAAGGTCAAGGAAGTCCATATCCACATTGCATCCTCTCAGTATCTTCAAACTCTCAAGAACAATGAGCAGTAGCATGAGGGAGATTATACTTCCAAGTAGTCTAATAGGTGCAGATTCTACCTCCTCTCACAGGTCACCCAAGATTTTTACCCAGCATGAGATACAAATTGCAACCAATTATTTTGACCAAGAAAATTTGATTGGGAAGGGTGGTTATGCTGATGTTTTCAAAGGGCGTTTGCCAAATGGTCAGCTAGTAGCAGTTAAACGGTTAACTAGAGGAACAGCAGATGAAACCACAAGGGACTTCTTAACAGAACTTGGCATAATGGCTCATGTAAACAATCCCAACACTGCTAAACTGGTTGGCTATGGAGTGGAAGGAGGAATGTGTGTAGTGCTTGAATTGTCTGAAAAGGGAAGCCTAGCTTCACTGCTTCACACTAGAGGTTCCAAGGAGAAACTAGCATGGTCTATTAGGCAGAAAATTGCATTAGGGATAGCTAAGGGTATATGGTATCTTCATGAAGGTTGTCCAAGAAGAATTATTCACAGAGATATAAAAGCTGCAAATATCTTGCTCACTGAGGACTTTGAGCCGCAGATTTGTGATTTTGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCATCACACAGTTTCAAAATTTGAAGGAACTTTTGGTTACATTGCTCCTGAGTACTTGCTTCATGGGATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTAGTGTTGCTAGAATTAGTCACTGGGAGGCGAGCACTAGACTATTATTCACAGCAAAGCCTTGTTTTGTGGGCAAAGCCTTTGTTGAAGAAGAATTACATTAGGGAGCTGGTTGATCCTTCACTAGCCAATGGTGACTTTGATTGTCGGCAGGTTGAGATTATGCTCTTTGTAGCATCTTTATGCATTCAACAATCCTCAATTCGTCGTCCCTCTATGAGACAGGTTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTTAAGTCCACCAACAAATCTCTGGACTTTCATTCTTAG 1212 0.415 MKHKVDSPVGVLENYFKSSESDTSSSSKELSVNSESRDISKSSSRWHAILQLLRTRSRKSISTLHPLSIFKLSRTMSSSMREIILPSSLIGADSTSSHRSPKIFTQHEIQIATNYFDQENLIGKGGYADVFKGRLPNGQLVAVKRLTRGTADETTRDFLTELGIMAHVNNPNTAKLVGYGVEGGMCVVLELSEKGSLASLLHTRGSKEKLAWSIRQKIALGIAKGIWYLHEGCPRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYIAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYYSQQSLVLWAKPLLKKNYIRELVDPSLANGDFDCRQVEIMLFVASLCIQQSSIRRPSMRQVVQLLNGNLSCFKSTNKSLDFHS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1177 403 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 398 - -
Lja1g1177 403 Gene3D Phosphorylase Kinase; domain 1 90 190 - -
Lja1g1177 403 MobiDBLite consensus disorder prediction 17 36 - -
Lja1g1177 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Lja1g1177 403 ProSiteProfiles Protein kinase domain profile. 116 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1177 403 SUPERFAMILY Protein kinase-like (PK-like) 96 385 IPR011009 -
Lja1g1177 403 Gene3D Transferase(Phosphotransferase) domain 1 193 399 - -
Lja1g1177 403 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Lja1g1177 403 SMART serkin_6 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1177 403 PANTHER OS08G0249100 PROTEIN 1 398 - -
Lja1g1177 403 Pfam Protein kinase domain 117 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1177 403 CDD STKc_IRAK 122 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1177 Lja-Chr1 12065419 12071703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1177 102 388 Receptor kinase-like Gene Family AT1G34210 44.218 3.47e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja1g1177 Pkinase 7.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1177 - - gmx:100802873 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1177 1 12065419 12071703 Lja1g0255 1 2182893 2186851 ECH
Lja1g1177 1 12065419 12071703 Lja5g1504 5 15817684 15820816 ECH
Lja1g1177 1 12065419 12071703 Lja1g1177 1 12065419 12071703 ECH
Lja1g1177 1 12065419 12071703 Lja5g1102 5 11064267 11068326 ECH
Lja6g2793 6 57017080 57020081 Lja1g1177 1 12065419 12071703 ECH
Lja1g1177 1 12065419 12071703 Lja5g1102 5 11064267 11068326 PCT