Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1176 ATGTCACTCTCCTTCCTCATCTTCCTCCTCTTCTTCACCACTTCCCTCGCCGCCGACGACGCTCCATGCCCCTTCAACATCACCGTCCTCCGCGCCGTCAGCAACGGCCGCACCCCCACCTTCGACTCCAACTCCCGCTGCCAATACATCCTCCAAGCCCTCCACCTCCTCCAAGCCGACTACCTCCGCCGCACCTCCCGCTTCGTCCCTCCTCTCAACTCCTCCGAAGCCTGCTGGACCGCCTTCGAATCCTTCATCAACGAATTCGCCCGCCCCAGCTTCAACATCCGCTCCTCATGCGGCTTCCAAACCTCATGGATCTCCCAAGGTTGCATGAACATCACCACCCTGCAACAATTCCAAGCCATCCCCCCAAACTCCACACTCCAAGCCGTTCGCGACAACTGCAACCAATCCCTCACCAACAACGCCCCCTGCGCCCTCTGCACCACCAAGTTGTCAACCCTTCTCTCCTACTTCACCGGACCCACCGTCGGCAACGTCTCCGAGTGCAGACCCTATACCCAAATCTACGCCGCCAGTTTCTCCGATCAGTACGGACCCACCGACCCAGGAACCGCAAAGTGCTTGTTCGGTCTTGATTTCTCCAATTCCGGTTCCGGTAAGAGCAAAACCCTAGTAATCGCGCTTGTTACTGTTTTCTGTGTTCTGGGGTTGTTGATAGTTTTTGGAATTTGGGGGTACTTGAGATTCAAGCGGAGGAATGATGATAGAGCCAAGGAAGGTAAAGCTATTGAGATTACTCAGGGGGGTTCTGGGTTGGATTCAATGAGCCAGAGTACTACTTTGATTAGGTTTACCTACAATGAGATTAAGAAAGCAACTAGGAATTTTTCAAGGGATAACATAATTGGGATGGGGGGTTATGGGAATGTTTATAAAGGGGTGCTTTCTGATGGAAGCCAGGTTGCTTTGAAAAGGTTCAAGAATTGTTCTGTTTCTGGGGATGCTAGTTTCACTCATGAGGTTGAGGTTATTGCTAGTGTCAGGCATGTGAATCTTGTTGCTCTTAGGGGTTATTGTACTGCCACCACTAACATGGAAGGTCATCAGAGGATTATTGTGACTGATTTGATGGAGAATGGGAGTTTATATGATCACTTGTTTGGTTCTGCGAAGAAGAAGCTTAGCTGGCCGATTCGTCAGAAGATCGCTCTCGGCACGGCCAAGGGGTTGTCTTATTTGCACTATGGGGCTCAGCCTTCGATTATCCATAGGGATATTAAGGCTAGCAATATACTTTTGGATGAGAAGTTTGAAGCAAAAGTTGCTGACTTTGGGTTAGCTAAGTTCAACCCTGAGGGAATGACACACATGAGCACGAGGGTGGCTGGGACGATGGGGTATGTGGCTCCTGAGTATGCTTTGTATGGGCAATTGACGGAGAGGACTGATGTGTTTAGTTTCGGCGTTGTGCTTCTCGAGCTTTTGAGTGGGAAAAAGGCTCTTCAGTCGAACGACGAAGGGCAACCCACTGCTCTCACTGATTTAGCTTGGTCATTGGTTAGGAATGGCGCAGCTTTGGATGTTATTGAAGATGGGTTACCAGAACCTGGTTCCCCACAGGTTCTTGAGAAATATGTGTTGGTCGCTGTGTTATGTTCCCATCCACAGCTATATGCTAGGCCAACAATGGATCAGGTTGTTAAGATGCTGGAGACAGAGGATTCAGTATCAGTGCCCTCAATTATGGAAAGACCAATTCCTTTCATTGCTGGGAGGCTTGACATTGAGAAATCTGCCAGCAGTAACAACTCCGGTCAGCTCTGCAGTCCGACGGGTTATCAAGCGTATACAATGCAAAGTCGCCACCTTTCTAATTCTAAGGAGGAAGAAGAAAGCTCATACATAACACAAAGTCGCCGCCTTTCTAATTCTAAGGAAGAAGAAGAAGATGAAGAAGAAATCTCCGGATCCGGAACTGTGAGCAAAGATTGA 1959 0.4926 MSLSFLIFLLFFTTSLAADDAPCPFNITVLRAVSNGRTPTFDSNSRCQYILQALHLLQADYLRRTSRFVPPLNSSEACWTAFESFINEFARPSFNIRSSCGFQTSWISQGCMNITTLQQFQAIPPNSTLQAVRDNCNQSLTNNAPCALCTTKLSTLLSYFTGPTVGNVSECRPYTQIYAASFSDQYGPTDPGTAKCLFGLDFSNSGSGKSKTLVIALVTVFCVLGLLIVFGIWGYLRFKRRNDDRAKEGKAIEITQGGSGLDSMSQSTTLIRFTYNEIKKATRNFSRDNIIGMGGYGNVYKGVLSDGSQVALKRFKNCSVSGDASFTHEVEVIASVRHVNLVALRGYCTATTNMEGHQRIIVTDLMENGSLYDHLFGSAKKKLSWPIRQKIALGTAKGLSYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERTDVFSFGVVLLELLSGKKALQSNDEGQPTALTDLAWSLVRNGAALDVIEDGLPEPGSPQVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETEDSVSVPSIMERPIPFIAGRLDIEKSASSNNSGQLCSPTGYQAYTMQSRHLSNSKEEEESSYITQSRRLSNSKEEEEDEEEISGSGTVSKD* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1176 652 SMART serkin_6 285 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1176 652 SUPERFAMILY Protein kinase-like (PK-like) 267 583 IPR011009 -
Lja1g1176 652 Gene3D Transferase(Phosphotransferase) domain 1 366 569 - -
Lja1g1176 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Lja1g1176 652 Pfam Protein kinase domain 286 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1176 652 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Lja1g1176 652 CDD STKc_IRAK 291 560 - -
Lja1g1176 652 ProSiteProfiles Protein kinase domain profile. 285 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1176 652 MobiDBLite consensus disorder prediction 612 635 - -
Lja1g1176 652 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 20 615 - -
Lja1g1176 652 PANTHER OS01G0253100 PROTEIN 20 615 IPR045271 GO:0004714|GO:0006468
Lja1g1176 652 MobiDBLite consensus disorder prediction 609 652 - -
Lja1g1176 652 Gene3D Phosphorylase Kinase; domain 1 250 364 - -
Lja1g1176 652 Pfam SPARK 20 167 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1176 Lja-Chr1 12055752 12057993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1176 7 607 Receptor kinase-like Gene Family AT2G48010 60.661 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja1g1176 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1176 - - gmx:100786298 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1176 1 12055752 12057993 Lja1g1176 1 12055752 12057993 ECH
Lja1g1176 1 12055752 12057993 Lja5g1100 5 11026155 11028588 ECH