Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1162 ATGGCCACAACGCTCGCTCTCAGAAACTCCTCTTCTACCTGTAGGAGACACCTCTCCTATCTCCCATTCTCCTCTCACATCCTCCACTCCTCTCTCTCCTCTTCCCCTCTCTTCAATGACACTCCCTCCTCGTTCTCATCACCTTCTTCCTCCAACCCGTGGTGGAGATCCATGGCCACTTTCACCCGAACGAAGCCTCATGTTAATGTGGGAACTATTGGGCACGTTGATCACGGGAAGACAACGCTAACTGCCGCAATCACCAAGGTGCTTGCTGATGAAGGGAAAGCGAAAGCTATTGCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACCATTGCTACTGCACATGTTGAGTATGAGACTGTGAAACGGCATTATGCACATGTGGACTGCCCTGGACATGCTGATTATGTTAAGAATATGATTACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCTGCACCTGATGGACCGATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTCTTAAATAAAGTTGATGCTGTCGATGATCCAGAATTGTTAGAACTTGTAGAAATGGAGCTCCGCGAGCTTCTGAGCTTCTACAAGTTTCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCGTTGTCCGCTTTACAGGGTACAAATGACGAGATTGGTAAAAAGGCTATTCTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCTAATGCCAATTGAAGATGTATTCTCCATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAGGGGTAATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTCATGCAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGGACGAGGGAGGGCGACACACTGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCCACTTGAACCAGGACAACGATTTGCCTTGAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCTAA 1362 0.4596 MATTLALRNSSSTCRRHLSYLPFSSHILHSSLSSSPLFNDTPSSFSSPSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKKAILKLMDAVDEYIPDPVRQLDRPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKMVMPGDNVTATFDLISPVPLEPGQRFALREGGRTVGAGVVSKVVS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1162 453 Gene3D - 57 260 IPR027417 -
Lja1g1162 453 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 106 121 IPR031157 -
Lja1g1162 453 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 362 452 IPR009001 -
Lja1g1162 453 Hamap Elongation factor Tu [tuf]. 56 453 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja1g1162 453 PANTHER ELONGATION FACTOR TU 28 453 - -
Lja1g1162 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 283 IPR027417 -
Lja1g1162 453 TIGRFAM small_GTP: small GTP-binding protein domain 68 204 IPR005225 GO:0005525
Lja1g1162 453 PRINTS GTP-binding elongation factor signature 149 160 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 PRINTS GTP-binding elongation factor signature 186 195 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 PRINTS GTP-binding elongation factor signature 133 143 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 PRINTS GTP-binding elongation factor signature 113 121 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 TIGRFAM EF-Tu: translation elongation factor Tu 57 452 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lja1g1162 453 Pfam Elongation factor Tu GTP binding domain 65 258 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 261 IPR000795 GO:0003924|GO:0005525
Lja1g1162 453 Pfam Elongation factor Tu domain 2 282 352 IPR004161 GO:0005525
Lja1g1162 453 Gene3D Translation factors 263 393 - -
Lja1g1162 453 Pfam Elongation factor Tu C-terminal domain 357 451 IPR004160 -
Lja1g1162 453 SUPERFAMILY Translation proteins 262 358 IPR009000 -
Lja1g1162 453 PANTHER ELONGATION FACTOR TU-RELATED 28 453 - -
Lja1g1162 453 CDD EF_Tu 66 260 IPR041709 -
Lja1g1162 453 CDD EFTU_II 268 356 IPR033720 -
Lja1g1162 453 Gene3D Translation factors 397 452 - -
Lja1g1162 453 CDD EFTU_III 359 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1162 Lja-Chr1 11933492 11937881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1162 63 451 Eukaryotic Initiation Factors Gene Family AT5G60390 29.452 2.83e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1162 K02358 - gmx:100791600 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1162 1 11933492 11937881 Lja1g1162 1 11933492 11937881 ECH