Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1153 ATGGCAGAAAACGATCCGTCGAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGGTCCTTGGTGAAGGTACCTATGGTGTCGTCTACAAAGCCATTGATACCCAGACAGGACAAACGGTTGCCATTAAAAAGATTCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTCCCGCATAAAGGGAATTTACATCTTGTATTTGAGTTCATGGAGACAGACCTCGAAGCTGTCATAAGAGACCGGAATATTTTCCTTTCTCCAGGAGATATTAAATCTTACCTTCAAATGACGCTAAAAGGCCTTGCTGTCTGCCACAGGAAATGGGTTCTGCATAGGGATATGAAACCAAACAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGTCCAGATCGCCGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGTACAAAGCAGTATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCGGAACTCCTCCTTCGTCGTCCTTTTCTTCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCGTTTGGAACTCCTTCACCTTCCCAGTGGCCTGATATGGTTTACCTTCCTGATTATGTTGAATACCAATATGTCCCTGCTCCCCCTTTGCGTTCTTTATTTCCGATGGCAAGTGATGATGCTTTGGATTTGTTGTCAAAGATGTTCACATATGATCCAAAGGTTAGAATTTCCGTGCAGCAGGCATTAGAACATAGGTACTTTTCTTCTGCTCCTCTGCCTACAATTCCAGATAAGCTTCCTAGACCTGCCCCTAAGAAGGAGTCTAGGGCTTCAGATTTCAATCCTCATGAGGGTCCTACTGTCTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGGTCTGAAGGAAATTCTTTGCAAGAGGCGGATAAGGTTGATGACAATGTTGGTAATTTCAGACAGACAGCCGGTGATAATACAGGCAAGAGTGAGCCGGCGCCAATGTCTCTAGATTTTTCTATATTTGGAATAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAGTTAGATCTAGAATTCCAGCATGACTAG 1248 0.4295 MAENDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHRKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKVRISVQQALEHRYFSSAPLPTIPDKLPRPAPKKESRASDFNPHEGPTVLSPPRKSRRVMPGRDGSEGNSLQEADKVDDNVGNFRQTAGDNTGKSEPAPMSLDFSIFGIKPPNRPTINSADRSHLKRKLDLEFQHD* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1153 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lja1g1153 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1153 415 PANTHER CELL DIVISION PROTEIN KINASE 9 355 - -
Lja1g1153 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1153 415 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Lja1g1153 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lja1g1153 415 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Lja1g1153 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 355 - -
Lja1g1153 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lja1g1153 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lja1g1153 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1153 415 MobiDBLite consensus disorder prediction 300 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1153 Lja-Chr1 11836435 11841849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1153 8 412 Core Cell Cycle Gene Families AT1G73690 76.296 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lja1g1153 Pkinase 5.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1153 K02202 - mnt:21388634 759.214