Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1147 ATGTCGAGGATATGTGTGAAGAATCTCCCAACAGATTATGCGGAGGATAAGCTAAGAGAATTATTTTGTCCGAAAGGACAAGTCACTGATGTCAAGCTTATGCGTACCAAAGATGGAAAGAGTCGCCAATTTGCTTTTATTGGATTTAGTTCAGACCATGAAGCGCAAGAAGCTATTCGATATTTCAATAGTAATTATTTCGGTGCATCTAGAATTACATGTGAGGTAGCTCTAAAACTTGGTGATGCAAATCTTCCGCGTCCATGGAGTCGACATTCTAAAAAGAAGGACAATGAAGTGACCACCCCAGATGCAAACAAACATGTTAGAGCTAAAGATAAAGGAAACAAGTCTAAGGACATTGTTGATATTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGAGCTGTGTCTAAATTGTGGGCAAATGATACATCAATTGTATCCAATGTTAGCAACAACCAAGAAATATCAAATAAGGACAGCAAATGTACGCCCGATACAATCCATCCCATCTCAGTTGAAAGTGGCTCAGAAGTAGATGGACTTCCAAACAATCCTGAACCCATCCAGTCACGTGAAGTTGAACATCATGAAGTGATTTCTGATATGGATTATTTCAAGAGTAGAGTCACAAGTGGGTGGTCTGATTCTGAAGACAACAGTGACGACAATGATTCAATGTGCATTGATGATGATGACAAAGACAATTGTAGTCATGCTAGTGAACATGAAGAAAATTGTGATAAGAACCCTTCTGAAAGAACCCCAAGAAAATGTGCTCAGGAGTTAGATAGAGAGGGTAAAAAAGATAGTTGTGGAGAGGGTGGTGCCCATGATAAAGCTCAAGTAAATGCAACTGAGCAAGAATCATCAAATCCTGAAGATGCTAGAGGAGTTTTTGAGTCCTGTCGACTGTTTGTCCGAAATCTGCCATATACCACCACTGAGGAAGAACTGCTCAAGCATTTCAGTAGTGTAGGACCTGAAGGTACTGTCTCAGAGGTTCATCTAGTTGTTGATAAAGATACGAAGCGATCCAAAGGAATAGGATATATTCGTTATTCAGATCCGAAATTCGCAGCCAGGGCGATAGAAAAGTTGGACAATTTAAGTTTTCGAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCAAACAAAGAAGAGAACAATGTTTCGAAGGTCCAGAACTCTAAAACTCTCAAACAACGTAGAGAGGATGAGAGGAAAGCAGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTGTTTATGCGCTCTGATACTGTTGCGGAAAATATTGCTCGGAAATATGGCGTAAGTAAGAGTGACTTACTTGATCCAGAAGCTGATGGTCTTGCTGTCCGCATTGCTCTGGGAGAAACTCAAGTGATTACAGAGACAAAAAAGGCACTAACAAATGCTGGAGTGAATGTGGAGTCCTTGGAGGAATTTGCTAATCGCAAAGTTGATGGCTTGAAAAGAAGTAACCATGTGCTTTTAGTGAAGAACTTGCCCTATGGTTCGACAGAAAGTGAACTTGTTACGAAGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTTCGACAAAAACTTTGGCCTTGATTATTTTCCTTGAACCCGCAGAAGCAAAAGCAGCTTTTAGAGGTTTAGCTTACAAGCCTTACAGGGGTGCTCCATTATACTTGGAGTGGGCTCCTTCTAATATTCTTAGTCAAAGTTCAATGTCTAAAAGTAATGAAATGAATGGTGGAATTGGTGAAAATGATGCCAAACGGCTGATATTGGAGCAAAATGTGGAAAGAATATCAGATGTTGATATTGATCCAGACAGAGTAGAGTCCCGGTCGCTGTTTGTCAAGAACCTAAATTTCAAGTCAACAGATGAAAGTTTGAGGAAACATTTTAGTGAACACATTAAAGAGGAAAGCATTTTGAGTGTCAAGGTGAATAAGCATTTGAAAAATGGGGAAAATGTTTCTATGGGGTTTGGATTTATTGAGTTTGACTCCCCGGATACGGCTACAAATGTTTGCAGAGATTTACAGGGCACTGTTTTGGACGGGCATGCTCTTATTTTACAGCTTTGTCATGCCAAGAATGATAGACCAGTACCTAAGTCGGTTGAGAAGGGTAAGAGTTCAACAAAATTGCTTGTAAAAAATGTTGCTTTTGAGGCAACAGCGGAGGAGCTGAGAGACTTGTTTGTCCCGTTTGGCAAGATTAAAAGCCTCCGGTTGCCTAAGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTGTTGAGTATGGTACTCAACAGGAGGCACAAAATGCTCTTACAGGTCTTTTAAGCACCCACCTGCGTGGTAGAAGCCTGGTGATAGAGAGAGCAAAAGAACGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCACAATTTAGTGAAGATAATGGATTTCGAAATGCTTTTAAGTTATCCAAGAAAAGGAAGCACATCAGTATCTCAGATGAAGGAGAAAGATGA 2535 0.4067 MSRICVKNLPTDYAEDKLRELFCPKGQVTDVKLMRTKDGKSRQFAFIGFSSDHEAQEAIRYFNSNYFGASRITCEVALKLGDANLPRPWSRHSKKKDNEVTTPDANKHVRAKDKGNKSKDIVDIDDPQLQDFLQVMQPRAVSKLWANDTSIVSNVSNNQEISNKDSKCTPDTIHPISVESGSEVDGLPNNPEPIQSREVEHHEVISDMDYFKSRVTSGWSDSEDNSDDNDSMCIDDDDKDNCSHASEHEENCDKNPSERTPRKCAQELDREGKKDSCGEGGAHDKAQVNATEQESSNPEDARGVFESCRLFVRNLPYTTTEEELLKHFSSVGPEGTVSEVHLVVDKDTKRSKGIGYIRYSDPKFAARAIEKLDNLSFRGRLLHVMPAIQRPSNKEENNVSKVQNSKTLKQRREDERKAAEASGDTRAWNSLFMRSDTVAENIARKYGVSKSDLLDPEADGLAVRIALGETQVITETKKALTNAGVNVESLEEFANRKVDGLKRSNHVLLVKNLPYGSTESELVTKFGKFGSLDKIILPSTKTLALIIFLEPAEAKAAFRGLAYKPYRGAPLYLEWAPSNILSQSSMSKSNEMNGGIGENDAKRLILEQNVERISDVDIDPDRVESRSLFVKNLNFKSTDESLRKHFSEHIKEESILSVKVNKHLKNGENVSMGFGFIEFDSPDTATNVCRDLQGTVLDGHALILQLCHAKNDRPVPKSVEKGKSSTKLLVKNVAFEATAEELRDLFVPFGKIKSLRLPKKFGSHRGFAFVEYGTQQEAQNALTGLLSTHLRGRSLVIERAKERESLDELRARTAAQFSEDNGFRNAFKLSKKRKHISISDEGER* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1147 844 MobiDBLite consensus disorder prediction 157 176 - -
Lja1g1147 844 SUPERFAMILY RNA-binding domain, RBD 299 397 IPR035979 GO:0003676
Lja1g1147 844 SMART rrm1_1 309 385 IPR000504 GO:0003723
Lja1g1147 844 SMART rrm1_1 507 574 IPR000504 GO:0003723
Lja1g1147 844 SMART rrm1_1 727 798 IPR000504 GO:0003723
Lja1g1147 844 SMART rrm1_1 627 705 IPR000504 GO:0003723
Lja1g1147 844 SMART rrm1_1 3 75 IPR000504 GO:0003723
Lja1g1147 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 389 IPR000504 GO:0003723
Lja1g1147 844 MobiDBLite consensus disorder prediction 87 122 - -
Lja1g1147 844 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 822 - -
Lja1g1147 844 MobiDBLite consensus disorder prediction 88 122 - -
Lja1g1147 844 Gene3D - 2 99 IPR012677 -
Lja1g1147 844 CDD RRM5_RBM19_like 626 707 IPR034423 -
Lja1g1147 844 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 822 - -
Lja1g1147 844 CDD RRM3_RBM19_RRM2_MRD1 309 385 - -
Lja1g1147 844 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Lja1g1147 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 626 709 IPR000504 GO:0003723
Lja1g1147 844 SMART rrm2_1 309 385 IPR003954 GO:0003676
Lja1g1147 844 SMART rrm2_1 3 75 IPR003954 GO:0003676
Lja1g1147 844 SMART rrm2_1 627 705 IPR003954 GO:0003676
Lja1g1147 844 MobiDBLite consensus disorder prediction 392 421 - -
Lja1g1147 844 Gene3D - 623 721 IPR012677 -
Lja1g1147 844 SUPERFAMILY RNA-binding domain, RBD 503 594 IPR035979 GO:0003676
Lja1g1147 844 CDD RRM6_RBM19_RRM5_MRD1 726 800 - -
Lja1g1147 844 SUPERFAMILY RNA-binding domain, RBD 612 714 IPR035979 GO:0003676
Lja1g1147 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 578 IPR000504 GO:0003723
Lja1g1147 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Lja1g1147 844 Gene3D - 221 403 IPR012677 -
Lja1g1147 844 MobiDBLite consensus disorder prediction 157 194 - -
Lja1g1147 844 CDD RRM1_MRD1 2 77 - -
Lja1g1147 844 MobiDBLite consensus disorder prediction 240 301 - -
Lja1g1147 844 MobiDBLite consensus disorder prediction 406 421 - -
Lja1g1147 844 CDD RRM4_RBM19_RRM3_MRD1 506 577 - -
Lja1g1147 844 SUPERFAMILY RNA-binding domain, RBD 714 806 IPR035979 GO:0003676
Lja1g1147 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 383 IPR000504 GO:0003723
Lja1g1147 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 728 795 IPR000504 GO:0003723
Lja1g1147 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 569 IPR000504 GO:0003723
Lja1g1147 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 628 702 IPR000504 GO:0003723
Lja1g1147 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Lja1g1147 844 MobiDBLite consensus disorder prediction 240 281 - -
Lja1g1147 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 726 802 IPR000504 GO:0003723
Lja1g1147 844 Gene3D - 722 822 IPR012677 -
Lja1g1147 844 Gene3D - 500 600 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1147 Lja-Chr1 11782038 11791053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1147 627 843 Eukaryotic Initiation Factors Gene Family AT4G34110 24.670 1.07e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1147 K14787 - gmx:100798742 1115.91