Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1146 ATGGAACAAGTTCGTTTGAAGAGTATTGAAAAAAAGAAAGTATCAGCTTGTAAATGGAATGGATACGTTCAAGAAACTCTGAAGCATTTGGGGTTTGAAGTTCCATCTATCAAGAAGAAAGGAGAAGAACGAAGAACAACAGCTACTCACAGGAAAGAAACAACAGTGATGGAAAAACTCGCTCTCATGCCCGAAAAGAAGGGAGAATCAAGCAAGAGGAGAGAAAGTGGAGGCTCAAGAGAGAATAACTTGGGCCTAGGCATTGACAATATCATTCAAACGAAGTTGCTGAAACATCAAGAGGAAGCTCTTGAGTGGCTCTTGAAACGCGAGAGTTCTGTGGAATCCCCAGCTTTCTGGACAAGAAGTGAACCTCTGCGGGGTGGAATCTTGAACGATTCTGCCACTTTGGGTAAGAAGTTGTCATTGCTTTCTTTGATTGCCCATGAGAAGAACAAAAGTGTGGAAACCAAGACTACATTGGTAGTGTCGGGTTATGCAAGTTTGAAGAACTGGTTATCAGAAGTAAGCCAACACGTTATCACGGGAACGCTTAAGGTACTTAATGCTGAATTTGGTGTTTGTATGGACATTGACTTCCATGAGAAAGTCAATGAATACGATCTTCTTCTGATCCACATGGGTGGCTTGGTACGTGCAATGGAAAGCATCCCCACCTTGGAGAAAGTATGGTGGAGAACAATTGTGGATAGAGCACACACCATCGAGGATATGGATTTTTATGCGAGTCAAGCAGTTATTGCGTTAAAGGCTGACCGGAAATGGGCTGTTACAGGAAAGCCTATTCTAAACGGGTCCTATAATTTGCTCTCGGTTCTTTCATATTTGGGATTCGAGTCATCCACAATTTGTGGACAAAGTCTTACGGATTTGGCAGCCTCGATTTCATTAGGGAGGACTAAAGAAATCTTACGACTGCCATCCCAGAATGTCGAAGTTCGATATGTTAACTTTTCTTCAGAAGAGCGTGTCTTACATGATAAACTGAAACATGAAGCTGATTCTCTTTCCGGAGTTCCTAACAATGAGGATGAGCTGCAGAATTTGATGTTTAGGCTTATCCGAATGTGCAGAGACTCTGCACTGTGTTTTTCAGATTCAGATTCTGATATTGAAGATATATCTAAGAAACCTGAGTTGCAGAAAGCGTTGGAAGATCCTGATGATTGTGCTATTTGTTTTACTCCACCAGAGGACACACTAGTCACAAAGTGTGGTCACGTTTTCTGCCGGCGTTGTATTCTCAAGCATCTTAAAACTAATAAAAAATGCTGTCCAGCTTGTCGGAAACGTATCAAAAAGCATTGTCTCTTTTCAGCAGGAGACTATCCCCGCCCAGAATTAGGGTCATCCAGCAAAGTCTCTGAACTTAAAAATCTTCTCATGGAGTCCAGGGATGAATCTCCAGCTACTAAGTCTGTTGTATTTTCAGAATGTCTTGAGATTTTTGAAGAGCATCTAAATGCCGCTGGTTTGAAGGCTCTATATTTTGACTCTTCAGATAAAGAGTCGGACATTATTCAGCAGTTTCGAGTTGAGGATGGACCGGTGGTCATGCTAGCAGGCATCTTCATTCATGTGGATGAGATAAACTTTAGTTGTGACCTTACCGCTGCATCTAGAATATACCTAATGGAGCCTTATCTAAGTCCAGAAATTGAGGCACGGATGATTGATCTTGTCCATCGCATTGGCCAAGACAAGATTGTGAATGTTGTTAAACTGATAATGCATAACAGCATTGAAGAAAAGATTCTAGAGTTGCAAGATATTAAGAGAGAAAGAGAAAGAGAAGCATTTGATGTGAATGGTAATCGAATCAACAAAGACGACTTGGAGTTTATTATGGGTGCTGTGGTTTGTACTTCTTCTTAA 1896 0.4124 MEQVRLKSIEKKKVSACKWNGYVQETLKHLGFEVPSIKKKGEERRTTATHRKETTVMEKLALMPEKKGESSKRRESGGSRENNLGLGIDNIIQTKLLKHQEEALEWLLKRESSVESPAFWTRSEPLRGGILNDSATLGKKLSLLSLIAHEKNKSVETKTTLVVSGYASLKNWLSEVSQHVITGTLKVLNAEFGVCMDIDFHEKVNEYDLLLIHMGGLVRAMESIPTLEKVWWRTIVDRAHTIEDMDFYASQAVIALKADRKWAVTGKPILNGSYNLLSVLSYLGFESSTICGQSLTDLAASISLGRTKEILRLPSQNVEVRYVNFSSEERVLHDKLKHEADSLSGVPNNEDELQNLMFRLIRMCRDSALCFSDSDSDIEDISKKPELQKALEDPDDCAICFTPPEDTLVTKCGHVFCRRCILKHLKTNKKCCPACRKRIKKHCLFSAGDYPRPELGSSSKVSELKNLLMESRDESPATKSVVFSECLEIFEEHLNAAGLKALYFDSSDKESDIIQQFRVEDGPVVMLAGIFIHVDEINFSCDLTAASRIYLMEPYLSPEIEARMIDLVHRIGQDKIVNVVKLIMHNSIEEKILELQDIKREREREAFDVNGNRINKDDLEFIMGAVVCTSS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1146 631 Gene3D - 64 294 IPR038718 -
Lja1g1146 631 MobiDBLite consensus disorder prediction 62 79 - -
Lja1g1146 631 SMART ring_2 397 435 IPR001841 -
Lja1g1146 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 446 IPR013083 -
Lja1g1146 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 620 IPR027417 -
Lja1g1146 631 SUPERFAMILY RING/U-box 388 441 - -
Lja1g1146 631 Coils Coil 585 605 - -
Lja1g1146 631 Gene3D - 314 624 IPR027417 -
Lja1g1146 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 285 IPR027417 -
Lja1g1146 631 MobiDBLite consensus disorder prediction 62 82 - -
Lja1g1146 631 Pfam SNF2-related domain 99 339 IPR000330 GO:0005524|GO:0140658
Lja1g1146 631 CDD SF2_C_SNF 458 583 - -
Lja1g1146 631 CDD RING-HC 397 435 - -
Lja1g1146 631 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 83 621 - -
Lja1g1146 631 ProSiteProfiles Zinc finger RING-type profile. 397 436 IPR001841 -
Lja1g1146 631 ProSitePatterns Zinc finger RING-type signature. 412 421 IPR017907 -
Lja1g1146 631 Pfam Zinc finger, C3HC4 type (RING finger) 397 435 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1146 Lja-Chr1 11771636 11775749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1146 91 631 RAD5 or RAD16-like Gene Family AT5G05130 35.629 1.07e-103 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g1146 SNF2_N 1.4e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1146 K15711 - fve:101311093 332.028