Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1145 ATGGATATTGACGATACACGCAGAGGTTTGAAAAGGAAGCCGCCAGATATGGATCGTGGTCATGAACATGGATCTTACAATATGAATTCTAGACCTTATGATAGGAACATGCCTCCTGATGGTTGGTTAGACTGCCCAGCACAAGGGCAAGAACTAGGATGCATAATTCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTATGTCTCGAGTAAAAAATATACTCCCAAGCAAGCAATTCTTCAACCGAGAGTCTTAGGTAGAGAACTTGGTTTGGTGATTGATCTGACAAATACTACTCGTTACTATCCAGTATCTGATTGGACAAAAGAAGGGATTAGGCATGTCAAGATAAGATGTAAAGGAAAAGATTCTGTACCTGATGAAGAATCTGTAAAAATGTTTTGCGATGAGGTTCTGGATTTTGGCTCCCAAAGAACAAACACAAAGAAATATATACTTGTACACTGCACACATGGGTTTAATCGTACAGGATATATGATTATTCATTTTCTTGTGCGTACGGAGTCAATTTCTGTCACCGAGGCAATAAAAAAATTTGCTCGGGCACGTCACCCAGGAATTTATAAGCCGGATTATATTGACGCCCTATATGTGTTTTATCATGAAAAGAAGCCTGAAGATCTTATTTGTCCACAAACTCCAGAATGGAAGTCTGATCCTAATTTTCATGGTCTGGATGTCCCAACTGTAGACAATCACAGAGACGCTCTACAGCAGGAGAATATTATGAGGAATGAAGTGTTGACAAATGATGATGCTTTGGGAGATCCCGTCGCTTCACACCAGCTGCGTGGAATGCAAGAACTTTGTTATCAACTGCTCAAGTTGGGCCCAGGGGGAAGAGGAGGACGTTTACAGTTTCCTGGATCGCACCCTGTTTCTCTGAACAGGGACAATCTGCAACTGTTAAGACAACGATATTATTATGCAACGTGGAAAGCTGATGGGACCCGATATATGATGTTGATTACTGGAGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCCGAAGGATCAATATGCGGTTTCCTTGCAGATACTCAAACGGGGGTACACCGGAAAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACATCGATCCACACACCCAGAAGCAAGAGAGAAGATACCTCATTTATGATTTGATTGCAATCAATCAAGTCTCTTTGACAGAGCTTCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTTATTGAACCTCGCAACATGGAACGTGAGGGCCTTTCCAAGAGCTTAGATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGAAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAATTTCATTCCGCAACTGTCCCATTCTTCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCAATGTGAGCTATCAGCCAGTGGCCGTCCCCTTCTTTTTCTGTTTGAGCGTGGAAAGAAGAAATTAATGGAAGGGACTGATGTTGTTTTTAAAGATGCATCAGATATTTCATCCTATTCAGGGAGGATCATTGAGTGCTACTTGGATCCTGTGAAGCATCATTGGGTCTGTATGCGGATCAGAATCGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGATAGCTCAAAAACTTGGTGATGCAAATCTTCCTCGTCCATGGAGTAGATATTCTAAAAAGAAGGACAATGAAGTGACCACCCCAGATGCAAACAAGCATGTTAGAGCTAAAGGACAAGGAGACAAGTCTAAGGACATTGTTGATATTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAGCCTCGGGCTATGTCTAAATTGTGGGCAAATGATACATCAATTGTATCCAATGTTAGCAACAACCAAGAAATATCAAATAAGGACAGAAAAGGTAGAAAAGGTATGCCAGAAGTGATCTATCCCATCTCAGTTGAAAGTGGCTCGGTAGTAGATGAACTTCCAAACAATCCTGAACCCAACCAGTCACGTGAAGTTGAACATCATAAAGTGATTTCTGATATGGATTATTTCAAGAGTCGAGTCACAAGTGAGTGGTCTGATTCTGAAAGCAGTGATTCTGGAGAAGACAGTGACGACAAGGATTCAATGTGCATTGATGATGATGACAAAGACAATCATAGTCATGCTAGTGAACATGAAGAAAACTGTGATAAGAACCCTTCTGAAAGAACCCCAAGAAAATGTGCTCAGGAGTTAGATCTAGAGGGTCAAAAAGATAGCTGTGGAGACGGTGTTGCCCCTAATAAAGCTCAAGTAAATGAAACTGTGCAAGAATCATCAAATCCTGAAGATGCTGGAGGAGTTTTTGAGTCCTGTCGACTGTTTGTCCGAAATCTGCCATATACCACCACTGAGGAAGAACTGCACCAGCATTTCAGTAGTGTAGGACCTGAAGGTACTGTCTCAGAGGTTCATCTAGTTGTTGATAAAGATACGAAGCGGTCCAAAGGAATAGGATATATTCGTTATTCAGATCCGGAATCCGCAGCCAGGGCGGTAGAAAACTTTGACAGTTCAATTTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGACCTTCAAACAAAGAGAACAATGTTTCGAAGGACCAGAGCTCTAAAACTCTCAAACAACGTAGAGAGGAAGAGAGGAAAGCAGCTGAAGCCGGTGGAGATACCAGAGCATGGAATAGTCTGTTTATGCGCCCTGATACAGTTGTGGAAAATATTGCTCGGAAATATGGTGTAAGTAAAAGTGATTTACTTGATCGAGAAGCTGATGATCTTGCTGTCCGCATGGCTCTGGGAGAAACCCAAGTGATTACAGATACTAAAAATGCATTAACTAATGCTGGAGTGAATGTGGAGTCTCTAGAGGAACTTGCTAATCATAAAGTTGATGGCTTGAAAAGAAGTAGCCATGTGCTTTTAGCGAAGAATTTGCCCTATGGGTCGACAGAAAGTGAACTAGTGAAGTTGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCGACAAAAACTTTGGCCTTGGTTATTTTCCTTGAACCCGGAGAAGCAAAAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGAAGCTCCATTATACCTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACGTCTAAAAGTAATGAAATGAATGGTGGAATTGGTGAAAATGATGCTAAACGTATGATATTGGAGCAAAATGTGGAAAGAATATCGGATGTGGATATTGATCCAGACAGAGTAGAGGCTCGGTCGCTGTTTGTCAAGAATCTAAATTTCAAGACAACAGAAGAGAGTTTGAGGAAACATTTTAGTGAACACATTAAAGAGGGAAGAATTATGAGTGTCAAGGTGAAAAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTCTTGAGTTTGACTCCATGGAGACGGCTACAAATGTTTGTAGAGATTTACAGGGCACTGTTTTGGACGGGCATGCTCTTAATTTACAACTTTGTCATGCCAAGAATGATAGACCAGTACCAAGGTCGGTTGAGAAGGATAAGAGTTCAACAAAATTGCTTGTAAAAAATGTTGCTTTTGAGGCAAAAGCGCAGGAACTGAGAAAATTGTTTGACCCGTTTGGCCAGATTAAAAGCTTACGGTTGCCTATGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTATAGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCGCTTGCAAACACTCACTTCTATGGTAGACATCTGGTGATAGAGAGAGCAAAAGAAGGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCACAATTTAGTGAAGATAATGGATTTCAAAATGCTGCTAGGTTGTCCAAGAAAAGGAAGCTCAGTATTTTAGATGAATGA 4065 0.4093 MDIDDTRRGLKRKPPDMDRGHEHGSYNMNSRPYDRNMPPDGWLDCPAQGQELGCIIPSKVPLGESFNDYVSSKKYTPKQAILQPRVLGRELGLVIDLTNTTRYYPVSDWTKEGIRHVKIRCKGKDSVPDEESVKMFCDEVLDFGSQRTNTKKYILVHCTHGFNRTGYMIIHFLVRTESISVTEAIKKFARARHPGIYKPDYIDALYVFYHEKKPEDLICPQTPEWKSDPNFHGLDVPTVDNHRDALQQENIMRNEVLTNDDALGDPVASHQLRGMQELCYQLLKLGPGGRGGRLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFRRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDIDPHTQKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSLDPYYRYDLEPFSVRRKGFWLLSTVSKLLHNFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFQCELSASGRPLLFLFERGKKKLMEGTDVVFKDASDISSYSGRIIECYLDPVKHHWVCMRIRIDKATPNDINTYRKIAQKLGDANLPRPWSRYSKKKDNEVTTPDANKHVRAKGQGDKSKDIVDIDDPQLQDFLQVMQPRAMSKLWANDTSIVSNVSNNQEISNKDRKGRKGMPEVIYPISVESGSVVDELPNNPEPNQSREVEHHKVISDMDYFKSRVTSEWSDSESSDSGEDSDDKDSMCIDDDDKDNHSHASEHEENCDKNPSERTPRKCAQELDLEGQKDSCGDGVAPNKAQVNETVQESSNPEDAGGVFESCRLFVRNLPYTTTEEELHQHFSSVGPEGTVSEVHLVVDKDTKRSKGIGYIRYSDPESAARAVENFDSSIFQGRLLHVMPAIQRPSNKENNVSKDQSSKTLKQRREEERKAAEAGGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRMALGETQVITDTKNALTNAGVNVESLEELANHKVDGLKRSSHVLLAKNLPYGSTESELVKLFGKFGSLDKIILPPTKTLALVIFLEPGEAKAAFRGLAYKRYKEAPLYLEWAPSNILSQSSTSKSNEMNGGIGENDAKRMILEQNVERISDVDIDPDRVEARSLFVKNLNFKTTEESLRKHFSEHIKEGRIMSVKVKKHLKNGKNVSMGFGFLEFDSMETATNVCRDLQGTVLDGHALNLQLCHAKNDRPVPRSVEKDKSSTKLLVKNVAFEAKAQELRKLFDPFGQIKSLRLPMKFGSHRGFAFIEYVTQQEAQNALTALANTHFYGRHLVIERAKEGESLDELRARTAAQFSEDNGFQNAARLSKKRKLSILDE* 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1145 1354 CDD RRM5_RBM19_like 1140 1221 IPR034423 -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 919 936 - -
Lja1g1145 1354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1240 1316 IPR000504 GO:0003723
Lja1g1145 1354 Gene3D Protein tyrosine phosphatase superfamily 15 230 IPR029021 -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 705 719 - -
Lja1g1145 1354 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 275 499 - -
Lja1g1145 1354 Gene3D - 499 590 IPR012340 -
Lja1g1145 1354 CDD RRM3_RBM19_RRM2_MRD1 824 900 - -
Lja1g1145 1354 Gene3D - 1137 1229 IPR012677 -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 693 777 - -
Lja1g1145 1354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1020 1092 IPR000504 GO:0003723
Lja1g1145 1354 SUPERFAMILY RNA-binding domain, RBD 808 912 IPR035979 GO:0003676
Lja1g1145 1354 PANTHER MRNA-CAPPING ENZYME-LIKE 4 589 - -
Lja1g1145 1354 CDD Adenylation_mRNA_capping 270 499 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lja1g1145 1354 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g1145 1354 PANTHER MRNA-CAPPING ENZYME 4 589 - -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 594 629 - -
Lja1g1145 1354 SUPERFAMILY RNA-binding domain, RBD 1017 1107 IPR035979 GO:0003676
Lja1g1145 1354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 39 226 IPR029021 -
Lja1g1145 1354 Gene3D - 1014 1114 IPR012677 -
Lja1g1145 1354 Gene3D - 1231 1339 IPR012677 -
Lja1g1145 1354 SMART rrm1_1 1141 1219 IPR000504 GO:0003723
Lja1g1145 1354 SMART rrm1_1 1241 1312 IPR000504 GO:0003723
Lja1g1145 1354 SMART rrm1_1 824 900 IPR000504 GO:0003723
Lja1g1145 1354 SMART rrm1_1 1021 1088 IPR000504 GO:0003723
Lja1g1145 1354 Gene3D DNA ligase/mRNA capping enzyme 259 498 - -
Lja1g1145 1354 Pfam mRNA capping enzyme, catalytic domain 300 498 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lja1g1145 1354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 134 203 IPR000387 GO:0016311|GO:0016791
Lja1g1145 1354 CDD RNA_5'-triphosphatase 41 207 - -
Lja1g1145 1354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1025 1081 IPR000504 GO:0003723
Lja1g1145 1354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 825 898 IPR000504 GO:0003723
Lja1g1145 1354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1142 1216 IPR000504 GO:0003723
Lja1g1145 1354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1242 1309 IPR000504 GO:0003723
Lja1g1145 1354 MobiDBLite consensus disorder prediction 596 629 - -
Lja1g1145 1354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1140 1223 IPR000504 GO:0003723
Lja1g1145 1354 Pfam Dual specificity phosphatase, catalytic domain 90 208 IPR000340 GO:0008138|GO:0016311
Lja1g1145 1354 SUPERFAMILY RNA-binding domain, RBD 1139 1316 IPR035979 GO:0003676
Lja1g1145 1354 MobiDBLite consensus disorder prediction 733 749 - -
Lja1g1145 1354 CDD RRM4_RBM19_RRM3_MRD1 1020 1091 - -
Lja1g1145 1354 MobiDBLite consensus disorder prediction 750 777 - -
Lja1g1145 1354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 823 904 IPR000504 GO:0003723
Lja1g1145 1354 SMART dsp_5 71 211 IPR020422 GO:0006470|GO:0008138
Lja1g1145 1354 CDD RRM6_RBM19_RRM5_MRD1 1240 1314 - -
Lja1g1145 1354 SMART rrm2_1 1141 1219 IPR003954 GO:0003676
Lja1g1145 1354 SMART rrm2_1 1241 1312 IPR003954 GO:0003676
Lja1g1145 1354 SMART rrm2_1 824 900 IPR003954 GO:0003676
Lja1g1145 1354 SUPERFAMILY Nucleic acid-binding proteins 501 586 IPR012340 -
Lja1g1145 1354 ProSitePatterns Tyrosine specific protein phosphatases active site. 156 166 IPR016130 GO:0016311|GO:0016791
Lja1g1145 1354 MobiDBLite consensus disorder prediction 904 936 - -
Lja1g1145 1354 Pfam mRNA capping enzyme, C-terminal domain 502 586 IPR013846 -
Lja1g1145 1354 Gene3D - 722 918 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1145 Lja-Chr1 11749182 11767952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1145 27 589 Protein tyrosine phosphatase (PTP) family AT3G09100 60.209 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1145 K14787 - mtr:MTR_7g094670 1575.84