Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1128 ATGGATTGCGCCGCCGCAGTTCAAAACTTGAAGCGCAAACGATACCTGATCGGCGATGAAGATCGGAATACACTGTTTGACGATTCTAAACGAGATCAATCCATCAAGATTCGCCATCAGGTTTATCATCTCAATTCCGTCGTTTCGCCGTCTTTGAAACTCGCAGATCTTGTATCCGCATTGACTGCCCTCCACGCTCTTTCTGAGTATGCTAAAGACGAGGAGCTCGTGGATAGTTTAGTGAATTCTGGAGTTGTGCCTATTATTATGAGGTTTCTTCTTGATCTGAGAGATGGAAATGACAGCGGCGAAGTTGTCACGGTTACCCTCAAGTATGAGTTGCAGAGAGGATGTGTTTTGGTCCTCTCCCTTCTCGCAGTTAAACCAGAGTATCAACAACTCATTGTTGATGCTGGAGTCTTGTCATATCTTGTTGATTTCTTAAGGTTGCACAAGACTGGTCTCATGTCTCAAGAACTTGTTGGTCTTCTTAAGAAAGCAGCAGATGCAATAACCAATCTTGCTCATGAAAACACCAACATTAAGAACCATCTCAGGAATGAGGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATTCAATGATTCAAAAGTACAAAGGGCGGCAGCAGGAGCCTTGAGAACTCTTGCATTTAAAAACGATGACAACAAAAATCAGATTATTGGATGCAATGCATTGCCCACTCTTGTACTAATGCTTCAATCAGAGGACCCTACAATTCATTTTGAGGCGGTTGGTGTAATTGGAAATCTGGTCCACTCTTCACCGAATATTAAGGAAGTTGTTCTTGAAGCTGGTGCTTTACAACCTGTGATTTTGTTATTGAGTTCCTCCTGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTTGCTGGATCAGACGAGTCAGATTCAAAGGCTCACATTGCCCAAAGAGGGGCTATAAGACCTTTGGTTGACTTGCTTATGTCGCCAGATGAAAACCTTAGAGAAATGTCTACTTTTGCTCTTGGGAGGTTAGCACAGGACTCGCATAATCAAGCTGGTATCGCTTATAACGGAGGTATAAAGCCTCTGCTCAATCTTCTTGAATCAAAGAATGGGTACATCCAACACCATGCAGCATATGCTCTCTATGGTCTTGCTGACAATGAGGACAATGTTGCAGATATTATTAAGGCTGGTGGTTTTCAAAAACTTCTGGATGGACATTTTGAAGCTCAACCTACTAAAGAGTGTGTAGCCAAAACAAAAAAAAGATTGGAGGAGAAGATGCATGGCCGAGTACTCAAACATGTATTATATCTTATGCGCTTTGCAGACAAAGGTGTTCAAAGACATGTAGCTATTGCACTTGCTCATTTATGTTCCCCTGATGATCATAAAACTATTTTTGTTGACAATAATGGACTAGAATTGCTGCTAGTTCTTCTTGAATCTTCAAACCTAAAGCAAAAGCGTGATGCTTCAGCAGCGCTTCACAAGTTGGCTTCCAAAGCCACATCTGTCTCTCTTGCTGATGCTGCTCCTCCATCATCACCATCTCCCCAGGTGTACTTGGGTGAACAATATGTGAATAATCCACAACTTTCTGATGTCACATTCTTAGTTGAAGGTAAGAGGTTTTATGCTCATAAAGTTTGTTTACTGGCTTCCTCTGATCCATTCCGCGCGATGTTTGATGGGGGTTATAGGGAAAGTGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATTTACACCGGAACAGTAGAGGTCAAATTGGATATTGTTGAGGACCTCCTCAGAGCTGCAGATCAATATCTTCTGGATGGTCTTAAGTGTCTTTGTGAAAAAGCTATTTCTCAGGTTATTTCTGTGGAAAATGTTACCATAATGTATGGTATGTCAGAGGTATATAATGCTACATCACTAAGAAATTCTTGCATTCTGTTTGTCCTGGAGCAATTTGATAAGCTTAGTGCCAAACCATGGTCTTCTCGCTTTCTTAGTTGCATTGCACCCGAGATACGCGATTTTTTCTCAGCTTTACTTACCAAGCCATGTTCAACTGATTCTTGA 2100 0.4129 MDCAAAVQNLKRKRYLIGDEDRNTLFDDSKRDQSIKIRHQVYHLNSVVSPSLKLADLVSALTALHALSEYAKDEELVDSLVNSGVVPIIMRFLLDLRDGNDSGEVVTVTLKYELQRGCVLVLSLLAVKPEYQQLIVDAGVLSYLVDFLRLHKTGLMSQELVGLLKKAADAITNLAHENTNIKNHLRNEGGIPPLVELLEFNDSKVQRAAAGALRTLAFKNDDNKNQIIGCNALPTLVLMLQSEDPTIHFEAVGVIGNLVHSSPNIKEVVLEAGALQPVILLLSSSCSESQREAALLIGQFAGSDESDSKAHIAQRGAIRPLVDLLMSPDENLREMSTFALGRLAQDSHNQAGIAYNGGIKPLLNLLESKNGYIQHHAAYALYGLADNEDNVADIIKAGGFQKLLDGHFEAQPTKECVAKTKKRLEEKMHGRVLKHVLYLMRFADKGVQRHVAIALAHLCSPDDHKTIFVDNNGLELLLVLLESSNLKQKRDASAALHKLASKATSVSLADAAPPSSPSPQVYLGEQYVNNPQLSDVTFLVEGKRFYAHKVCLLASSDPFRAMFDGGYRESEAKDIEIPNIKWNVFELMMRFIYTGTVEVKLDIVEDLLRAADQYLLDGLKCLCEKAISQVISVENVTIMYGMSEVYNATSLRNSCILFVLEQFDKLSAKPWSSRFLSCIAPEIRDFFSALLTKPCSTDS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1128 699 Gene3D Potassium Channel Kv1.1; Chain A 525 669 IPR011333 -
Lja1g1128 699 Pfam BTB/POZ domain 526 629 IPR000210 GO:0005515
Lja1g1128 699 ProSiteProfiles BTB domain profile. 534 601 IPR000210 GO:0005515
Lja1g1128 699 SUPERFAMILY ARM repeat 164 502 IPR016024 -
Lja1g1128 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 698 IPR044282 -
Lja1g1128 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Lja1g1128 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 358 IPR000225 GO:0005515
Lja1g1128 699 Gene3D - 156 306 IPR011989 -
Lja1g1128 699 Gene3D - 307 512 IPR011989 -
Lja1g1128 699 SMART BTB_4 534 631 IPR000210 GO:0005515
Lja1g1128 699 SMART arm_5 305 345 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 178 218 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 73 127 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 461 501 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 128 176 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 220 260 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 346 386 IPR000225 GO:0005515
Lja1g1128 699 SMART arm_5 262 302 IPR000225 GO:0005515
Lja1g1128 699 SUPERFAMILY ARM repeat 61 149 IPR016024 -
Lja1g1128 699 Pfam Armadillo/beta-catenin-like repeat 220 259 IPR000225 GO:0005515
Lja1g1128 699 Pfam Armadillo/beta-catenin-like repeat 182 217 IPR000225 GO:0005515
Lja1g1128 699 SUPERFAMILY POZ domain 525 627 IPR011333 -
Lja1g1128 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 7 698 - -
Lja1g1128 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 273 IPR000225 GO:0005515
Lja1g1128 699 Gene3D - 34 155 IPR011989 -
Lja1g1128 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 224 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1128 Lja-Chr1 11606450 11611375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1128 168 405 U-box Gene Family AT5G67340 29.502 5.94e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1128 BTB 8.1e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1128 - - qsu:112036025 863.603