Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1127 ATGGATCAGGATCACACTGCAGTCCGAAACTTAAAGCGTAAACAAGAAGAATGTAATAATAATACACAGCTAATAGATTCTCAACGAGATCAAACCGACAAGATTGTCCAACAGATTCTTGTCCTCAAATCCGTTGCTTCATCCTCTCTCTCAGATCGTGTTACCTGTGCTGCCGTAAAAACTGCCCTAAAAGTTCTTTCTGAACTTGTCGGAGACGAGGAGCTTGTGGATACTATAGTGAACTTTGACGTCGAAGTTCCAGATGGCTTGCAGATCGGATTCGTTTTGCTCATCGGCCTTCTGTCTTATAAAGCTCGGATTGCCCAAAGAGGGGCTATAATACCTTTGGTTGACTTGCTTAAGTCCTCAGATGAACTACTTTGTGCAATGTCAGCTTTTGTTCTTGGGAAGTTAGCCGAGGACAATGTTGTAGATATTATTAAGGCTGGTGGTATTCAAAAACTGCTCAATGGACATACTGAAGCTTCTGATTATGTGTGTCTGTGTGTGGAAATGATATTAAAAAGATTAGAGGAGAACATGCATGGGCGAGTACTGAAACATCTGTTGAATCTTATGCGCTTTGCAGACAAAGATGTTCAAAGACTTGTAGTTATTGCTCTTGCTCATTTATGTTCCCCTAATGATTATAAAACTATTTTCATTGTTAATAATGGACTAGAACTGCTTCTGGATCTTCTTGAATCTAAAAACCTAAAGCAGAAGAGTGATGCTTCAGCAGCGCTTCTCAAGTTATCTACCAAAGCCACATTTGTCTCTATTGTTGATGCTGCTTCTCCATTACTATCGTCCAAAGTGTACATGGACGAACATTATGTGAACAATCCCAAACTATCTAATGTCACATTCTTAGTTGAAGGTGAAAGGTTTTATGCTCATAGAGCTTGCTTGCAAGCTTCTTCAGATGCATTTCACGCAATGTTTGATGGGGGTTATAGGGAAAGTGAAGCCAATGACATCGAGATTCCAAATATTAAATGGGATGTCTTTGAGATGATGATAAGATTTATTTACACCGGAACAGTAGATGTCAAATTGGATATTGCTGTGGACCTCCTCATAGCTGCAGATCAGTATCTTATGGAAGATCTTAAGCGTCTTTGTGCACATGAAATTTCTCAAGATATTTCTGTGGATAATGTTTCACTAATGTACGATATGTCAGAGACATACAATGCTACATCATTAAGAAACGCGTGCATACTGTTTGTCCTGGAGCAATTTGACAAGTTGAGTGTCAAACCATGGTCAGTCCGCATATGA 1284 0.3941 MDQDHTAVRNLKRKQEECNNNTQLIDSQRDQTDKIVQQILVLKSVASSSLSDRVTCAAVKTALKVLSELVGDEELVDTIVNFDVEVPDGLQIGFVLLIGLLSYKARIAQRGAIIPLVDLLKSSDELLCAMSAFVLGKLAEDNVVDIIKAGGIQKLLNGHTEASDYVCLCVEMILKRLEENMHGRVLKHLLNLMRFADKDVQRLVVIALAHLCSPNDYKTIFIVNNGLELLLDLLESKNLKQKSDASAALLKLSTKATFVSIVDAASPLLSSKVYMDEHYVNNPKLSNVTFLVEGERFYAHRACLQASSDAFHAMFDGGYRESEANDIEIPNIKWDVFEMMIRFIYTGTVDVKLDIAVDLLIAADQYLMEDLKRLCAHEISQDISVDNVSLMYDMSETYNATSLRNACILFVLEQFDKLSVKPWSVRI* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1127 427 Coils Coil 11 31 - -
Lja1g1127 427 ProSiteProfiles BTB domain profile. 286 353 IPR000210 GO:0005515
Lja1g1127 427 SUPERFAMILY ARM repeat 98 255 IPR016024 -
Lja1g1127 427 SUPERFAMILY POZ domain 277 380 IPR011333 -
Lja1g1127 427 Gene3D - 15 270 IPR011989 -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 104 141 IPR044282 -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 84 IPR044282 -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 140 426 IPR044282 -
Lja1g1127 427 SMART BTB_4 286 383 IPR000210 GO:0005515
Lja1g1127 427 Pfam BTB/POZ domain 280 381 IPR000210 GO:0005515
Lja1g1127 427 Gene3D Potassium Channel Kv1.1; Chain A 277 420 IPR011333 -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 3 84 - -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 140 426 - -
Lja1g1127 427 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 104 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1127 Lja-Chr1 11536488 11540895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1127 104 270 U-box Gene Family AT2G23140 27.778 6.07e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1127 BTB 5.4e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1127 - - lja:Lj0g3v0243869.1 443.736