Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1126 ATGATAAAGACGTTAGATGAGCAGCTTTGTTCAGAGTCAGTTTGGACTCTTAGAAAGTTAGCAACGAACGACCCTGCCAATCAAGCTTGCATTGGTTATAGCGGAGGTATAGATCCTCTAATCAATCTTCTTTGGTCAAAGAGTCGGTCCATCAGATACCATGCAGGCCATGCGCTTGTTTGTCTTGCTGAAAATGAGGACAATGTTGAAGATTTCATTAAGGCTCTCAGTTTTCAAAAACTATTGTGTGGACGGTTCGAATGCCAAGATACTAAAGAGATTGCCTTAACGATTTTAAAAAGATTAAAGGAGAAGATGCATGGCCAAGTATTCAAGCACCTGTTATATCTTATGGGCATTGAAGACAGAAGTGTTCGAAGACGTATAGCTGCTGCTCTTGCTCACTTGTGTTCCCTTGATGATTGTAAAACTATTTTCGTTGTTAATCATGGACTGGAATTGCTTTTGGATCTTCTCAAATCTTCAATTCCATCTCAATTGATAACTGCTTCTGTAGCCCTTCTCCAGTTGGCTACCAAAGCCGCTGTTTCTCCTATGGATGTTGTTTCAGCAACCGGCCAGGTGTTACGCGGTGAAGAAAACTTGAACAATCCTGCAAATTATGATGTTGTGTTTTTAGTGGAAGGCCAAAAATTTTATGCGCATAGAGATTGTTTAACGGTTTCTTCTGAAGTGTTTTGCGCGATGTTGGCTGGAGGTTTTAAGGTGAAGGAAAGTGGAGCTGAAGATGAAGAGATACCGATACAAGATATTAAATGGGACGTGTTTGAATCAATGATGAGATTTATATACACAGACCAACTCAATGTGAATTTGAGTATTGCTCTGGATCTATTGAAAGTGGCTGATCAATTTCTTTTGGATGGTCTTAAGTGTCAATGTGAGAAGGTGATTTCTGCGTTTCTTTCCTTGGACAATGTTGTACAAACCTTCAACCTATCAGGGCTTTCTAGGGCTACAAGATTAAGAGATGAGTGCATAATGTTTGTCCTAAAGCAAATTCAGGAGTTGAGCCCGAGTGATGTCAAACCCTCGCATTATAACGCGGTTCATTCCATGTTAGCAGCCATGCCCACACTTTTCATGGATTTACTAACCAGAGCATGA 1128 0.4043 MIKTLDEQLCSESVWTLRKLATNDPANQACIGYSGGIDPLINLLWSKSRSIRYHAGHALVCLAENEDNVEDFIKALSFQKLLCGRFECQDTKEIALTILKRLKEKMHGQVFKHLLYLMGIEDRSVRRRIAAALAHLCSLDDCKTIFVVNHGLELLLDLLKSSIPSQLITASVALLQLATKAAVSPMDVVSATGQVLRGEENLNNPANYDVVFLVEGQKFYAHRDCLTVSSEVFCAMLAGGFKVKESGAEDEEIPIQDIKWDVFESMMRFIYTDQLNVNLSIALDLLKVADQFLLDGLKCQCEKVISAFLSLDNVVQTFNLSGLSRATRLRDECIMFVLKQIQELSPSDVKPSHYNAVHSMLAAMPTLFMDLLTRA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1126 375 SUPERFAMILY ARM repeat 6 180 IPR016024 -
Lja1g1126 375 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 374 IPR044282 -
Lja1g1126 375 Gene3D Potassium Channel Kv1.1; Chain A 198 338 IPR011333 -
Lja1g1126 375 ProSiteProfiles BTB domain profile. 208 279 IPR000210 GO:0005515
Lja1g1126 375 Pfam BTB/POZ domain 202 306 IPR000210 GO:0005515
Lja1g1126 375 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 374 - -
Lja1g1126 375 SUPERFAMILY POZ domain 202 306 IPR011333 -
Lja1g1126 375 SMART BTB_4 208 309 IPR000210 GO:0005515
Lja1g1126 375 Gene3D - 1 197 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1126 Lja-Chr1 11485659 11488206 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1126 BTB 2.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1126 - - rcu:8259094 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1126 1 11485659 11488206 Lja1g1126 1 11485659 11488206 ECH