Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1125 ATGGATTCTCCACTTGACAAGATTCCCCAACATGTTCTTGTCCTGAATTCCGCCCCCTCACCCTCTCTCTCAGATCGTGCTGCGGCAACAACGGCCCTTTATGTTTTAAATGGTGCCATTGCCAGAGAAGATCAAGATTCTCCACGAGTTCTACTTGACAAGATTCTCCAACATCTTCGTATCATCAATTCCGACCAATATTGTAATACAGAGACACAGACGAAGGATTCTCCACGACCACGAGATCTACTTGACAAGATTCTCCAACATGTTCTTATCCTCGACTCCGCCCCCCCACCCTCTCTCTCAAGCCGTGCTGCTGCTACTACTACGTTCGATGTTCGAAATGGCCCTCGCAGAGACGCGGAGCTTGCGGATATACTGAATTGTCATGCTGTCCCTGTTATTATGAGACTTCTTTTTTATTTGAGAGATGAAAATAGTGGTCAAGGCTTTTCCGATACCTTCAAATATGATGTGCAGAGAGGATGTGCTTTGGTCCTCACCCTTCTATCTTTTCAACCAAAGTATCAACGACTCATTGTTGATGCTGGAGCCTTGCCTCATCTTGTTGATTTGTTAAGGGTGCACAAGGCTGGTGTCATGTCTCAAGCACTTCTTGGTATTCTTAAGACAACAGCAGGCGCAATAACCTATCTTGCCTATGAAAACTCCAACATTAAGACCCTTGTTAGGAATGAAGGTGGTATTCCTCCTCTTGTTGAATTGCTTGAATTCAATGATTCAAAGGTACAGGTTGCAGCTGCAGGGGCCTTGCGAATTCTTGCATTCAGAAATTATGACAACGCAAATCAGATTGTTGACTGCAATGCATTGCCCACTCTTGTACTAATGCTTGCACCAGATGACCCTACTATACATTATGAGGCGGTTGGTTTAATTAGAAATCTGGTCCACTCTTTGCCGAATATTAAGGAAGCTCTTCTTGAAGCTGGTGCTTTACAACCAGTGATTTGGTTGTTGAGTTCCTCATGTTTGAAGAGCCAAAGAGAAGCAACTCTTTTACTTGGTCAGTTTGTTGAATTGGGTCGGGCTACTAAGGTTCAGATTGCCGAAAGAGGGGCTGTAAGACCTTTGGTTGACATGCTTACGTCCTCAGATGAACAACTTAGTGGAATGTCAGCTTTTGCTCTTGGGAGGTTAGCACAGGACCCTGACAATCAAGCTGACATTACTTATAATGGAGGTATAGAGCCTCTACTCAATCTTCTTGGCTCAAAGAGTTATTTTGTCCAACACAATGCAGCCTTCACTCTCTATGGTCTAGCTGTTAATGAGGACAATGTCGCAGATATTATTAAGGCTGGTGGTCTTCAAAAACTTCTTGATGGACATTTTAATACTATTCCTACTAAAAAGTGTGTAGCAATAACATTAAAAAAATTAGAGGACAAGATGCATGGGCAAGTACTAAAACACCTGATGAATCTTATGCGCTTTGCAGACAAAGGTGTTCAAAGACTTGTAGCTATTGCTCTTGCTCATTTATGTTCTCCCAATGATCGTAAAACTATATTCATTGTTAATAATGGACTAGAATTGCTTCTGGATCTTCTTGAATCTGCCAACCTAAAGCATAAGAGTGATGCTTCAACAGCGCTTTACAAGTTGGCTACCAAAGCCACCCGTGTCTATTGTGTTTTCCATGCTCCTCCATCATTCAAGTTGTACTCAGGCGAACAATATGTGAACAATCCTAATGTCTCTGATGTCACATTCTTAGTTGAAGGTAAAAGGTTTTATGCTCATAGAGGTTCTTTAAAGGCTTCTTCTGATGTATTTCGTGCAATGTTTGATCAGTGTTATATGGAAAGTGATGCCCAAGATATAGAGATTCCAAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACTGGAACAATAGATGTCAATTTGGATATTGCTGAGGACCTCCTCAGTCTTGCAGATCAATATCTTCTGGACAATCTTAAGTCTCTTTGTGAACATGCTATTTCTCAGGATATTTCAGTTGACAATGTTTCACTAATGTACGAGATGTCAGAGGCTTTCAATGCTACATCATTAAGAAATGTGTGCATATTGTTTTTTCTGGAGCAATTTGATAAGTTGAGTGTCAAACCATGGTATGTACAATCTTTACAACTTGAACAACACTTTAATAGTTGTTGTATTGTGAGGTTATAA 2199 0.407 MDSPLDKIPQHVLVLNSAPSPSLSDRAAATTALYVLNGAIAREDQDSPRVLLDKILQHLRIINSDQYCNTETQTKDSPRPRDLLDKILQHVLILDSAPPPSLSSRAAATTTFDVRNGPRRDAELADILNCHAVPVIMRLLFYLRDENSGQGFSDTFKYDVQRGCALVLTLLSFQPKYQRLIVDAGALPHLVDLLRVHKAGVMSQALLGILKTTAGAITYLAYENSNIKTLVRNEGGIPPLVELLEFNDSKVQVAAAGALRILAFRNYDNANQIVDCNALPTLVLMLAPDDPTIHYEAVGLIRNLVHSLPNIKEALLEAGALQPVIWLLSSSCLKSQREATLLLGQFVELGRATKVQIAERGAVRPLVDMLTSSDEQLSGMSAFALGRLAQDPDNQADITYNGGIEPLLNLLGSKSYFVQHNAAFTLYGLAVNEDNVADIIKAGGLQKLLDGHFNTIPTKKCVAITLKKLEDKMHGQVLKHLMNLMRFADKGVQRLVAIALAHLCSPNDRKTIFIVNNGLELLLDLLESANLKHKSDASTALYKLATKATRVYCVFHAPPSFKLYSGEQYVNNPNVSDVTFLVEGKRFYAHRGSLKASSDVFRAMFDQCYMESDAQDIEIPNIKWDVFELMMRFIYTGTIDVNLDIAEDLLSLADQYLLDNLKSLCEHAISQDISVDNVSLMYEMSEAFNATSLRNVCILFFLEQFDKLSVKPWYVQSLQLEQHFNSCCIVRL* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1125 732 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 319 IPR000225 GO:0005515
Lja1g1125 732 Pfam Armadillo/beta-catenin-like repeat 268 305 IPR000225 GO:0005515
Lja1g1125 732 Pfam Armadillo/beta-catenin-like repeat 227 263 IPR000225 GO:0005515
Lja1g1125 732 Gene3D - 328 553 IPR011989 -
Lja1g1125 732 Gene3D Potassium Channel Kv1.1; Chain A 566 710 IPR011333 -
Lja1g1125 732 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 266 IPR000225 GO:0005515
Lja1g1125 732 SMART BTB_4 576 673 IPR000210 GO:0005515
Lja1g1125 732 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 444 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 308 348 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 266 306 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 121 173 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 506 546 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 174 222 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 224 264 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 391 431 IPR000225 GO:0005515
Lja1g1125 732 SMART arm_5 350 390 IPR000225 GO:0005515
Lja1g1125 732 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 70 719 IPR044282 -
Lja1g1125 732 SUPERFAMILY ARM repeat 211 545 IPR016024 -
Lja1g1125 732 SUPERFAMILY POZ domain 555 670 IPR011333 -
Lja1g1125 732 SUPERFAMILY ARM repeat 127 208 IPR016024 -
Lja1g1125 732 Pfam BTB/POZ domain 569 671 IPR000210 GO:0005515
Lja1g1125 732 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Lja1g1125 732 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 235 IPR000225 GO:0005515
Lja1g1125 732 ProSiteProfiles BTB domain profile. 576 643 IPR000210 GO:0005515
Lja1g1125 732 Gene3D - 103 327 IPR011989 -
Lja1g1125 732 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 70 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1125 Lja-Chr1 11457689 11462200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1125 321 553 U-box Gene Family AT2G23140 29.876 2.05e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1125 BTB 3.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1125 - - lja:Lj0g3v0343689.3 1033.48