Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1117 ATGGAAAGCAGCATGAGCAGCAGCAACAGCAACAACCAGTGGAGAGCTGAGGAAGCAATTGGTGGCAACACTGAAGCTCTTGAAGCCCTCAGAGAACTCATCATATTCCCTCAACGATTCTCTCATGAAGCACGAAAGCTTGGCCTTAAATGGCCGAGAGGGTTGCTGCTTTACGGTCCACCAGGCACTGGAAAGACAAGTTTAGTACGAGCAGTTGTTCAGGAATGCGGGGCACATTTGACAATTATCAGTCCACACTCTGTTCATAGAGCACATGCCGGTGAAAGTGAGAGAATTCTCCGTGAAGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGCCATCAGTTATATTTATAGATGAAATTGATTCACTCTGTCCTCGTCGGGATTCCAAAAGGGAGCAAGATGTCCGAGTTGCCTCTCAACTCTTTACGCTGATGGACTCAAATAAACCATCCTCTTCTACACCAGGTGTAGTTGTGGTTGCATCTACTAACAGAGTGGATTCCATTGACCCTTCCCTAAGAAGGTTTGGACGTTTTGATGCTGAAATTGAAGTTACAGTTCCAAATGAAGAGGAGCGCTGTCAAATTTTGAAGTTGTATACAAAGAAGATTCCCTTAGATAGGGGTATTGACTTAACACCCATTGCCGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCACTGTGTCGTGAAGCTACTATGTTTGCGGTTAAAAGGTCCTCAAATACAAATGAAAATGCTAGTGATTTCTGTTTAACGATGGAGGATTGGGTGAACGCAAGGTCCGTGGTTGGTCCAAGTATAACAAGAAGTGTAACTAAGGAAATTCCCAAAGTGACTTGGGAAGACATTGGGGGCCTGAAAGAATTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTGGGGATAACTACTGTACGTGGAATTCTTCTACATGGGCCTCCAGGATGTTGCAAAACTACACTTGCCAAAGCTGCTGCACATGCTGCCCAATCTTCATTCTTTTCCTTGAGTGGTGCAGAATTATACTCAATGTATGTTGGAGAGGGGGAAGCATTGCTTCGTAAAACATTTCAGAGAGCACGTCTTGCAGCACCAAGTATAATCTTTTTTGATGAGGCGGATGTGATAGCTGGCAAACGGGGTGATAGCTCAAGCGGTAGTGCTACTGTTGGAGAGAGACTTTTATCCACTCTGCTGACTGAGATGGATGGCTTAGAAGAAGCTAAAGGAATCCTTGTTTTGGCAGCTACAAATCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCTGGACGATTTGATCTGGTTCTATATGTGCCACCACCTGATTTGGAGGCTCGATATGAGATACTTCGTGTGCATACAAGTAGGATGAATATAGAGAGTGATGTTGATCTTAGAAGACTAGCAGAACATACTGAGCTCTTCACAGGTGCTGAACTGGAGGGGTTATGCAGGGAAGCTGGAATAGTAGCCCTAAGGGAAGACATATCCGCTTATGCTGTTCGTGACCATCATTTCCAGATTGCAAAGAGTTCCTTGAAACCAGCATTAACACCAGCAGACATTGATTCATACTCATCTTTTATGAAGAACCCATCTCGTGCTTTCTCTGTGCACTCTGAACCTGGTTTGAAACTGGAAAACAAAAAGAACAAGTTGGGTCATTTGTCTTTGGTTAAGATTGGTCTAGTCAGCTGTGTGTTACTTGCTGCTGCCAAATACTATGCCATTCATGGAGGCCAATCTATACGTAATGTAGCCACTTGA 1821 0.4421 MESSMSSSNSNNQWRAEEAIGGNTEALEALRELIIFPQRFSHEARKLGLKWPRGLLLYGPPGTGKTSLVRAVVQECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDSLCPRRDSKREQDVRVASQLFTLMDSNKPSSSTPGVVVVASTNRVDSIDPSLRRFGRFDAEIEVTVPNEEERCQILKLYTKKIPLDRGIDLTPIAASCNGYVGADLEALCREATMFAVKRSSNTNENASDFCLTMEDWVNARSVVGPSITRSVTKEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGITTVRGILLHGPPGCCKTTLAKAAAHAAQSSFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVIAGKRGDSSSGSATVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTSRMNIESDVDLRRLAEHTELFTGAELEGLCREAGIVALREDISAYAVRDHHFQIAKSSLKPALTPADIDSYSSFMKNPSRAFSVHSEPGLKLENKKNKLGHLSLVKIGLVSCVLLAAAKYYAIHGGQSIRNVAT* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1117 606 CDD AAA 21 189 - -
Lja1g1117 606 Pfam AAA+ lid domain 480 525 IPR041569 -
Lja1g1117 606 Pfam AAA+ lid domain 214 255 IPR041569 -
Lja1g1117 606 PANTHER AAA-FAMILY ATPASE 23 534 - -
Lja1g1117 606 Pfam ATPase family associated with various cellular activities (AAA) 325 457 IPR003959 GO:0005524|GO:0016887
Lja1g1117 606 Pfam ATPase family associated with various cellular activities (AAA) 55 189 IPR003959 GO:0005524|GO:0016887
Lja1g1117 606 Gene3D - 275 459 IPR027417 -
Lja1g1117 606 SMART AAA_5 51 193 IPR003593 -
Lja1g1117 606 SMART AAA_5 321 460 IPR003593 -
Lja1g1117 606 ProSitePatterns AAA-protein family signature. 428 446 IPR003960 GO:0005524|GO:0016887
Lja1g1117 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 276 IPR027417 -
Lja1g1117 606 Gene3D - 460 550 - -
Lja1g1117 606 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 23 534 - -
Lja1g1117 606 CDD AAA 291 458 - -
Lja1g1117 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 526 IPR027417 -
Lja1g1117 606 Gene3D - 192 274 - -
Lja1g1117 606 Gene3D - 3 190 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1117 Lja-Chr1 11332018 11340243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1117 260 560 Calmodulin-binding Proteins AT3G56690 45.183 9.92e-80 270