Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1113 ATGCAGGAATCAGAATCAGATGTAACAAGAAAAAGAAGAAGCAACTATCATAATCTCAGACGCCTCAACCTATGTTTCTCCTCCTCAACTTTCACACAACCCCAAACTCATCCTATAACTTCTTCTTCTTCTTCTTCTTCTTCCCTTCCTCAACAACAACAACATCACAACCGTCCATCACCAACCACCAATGCAACCTCATCAATCATGATCAACAACTTCAACACCACTTTCTACCACCACCACCACCACACCTCCTCCTCTTCCTCCTCCAACCAAATCGAACCGGAGCCCGAATCCAAACCAGCCGACTTCGCCACCGCCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCCGGCCGCTCCAACTCCATCATCGAACGCGCCAACACCAACTCCACCGCCATTCTGGACGGGAGCGTGGCGGTGCCAACCTACTCGCCGGACCCTTACGCGGACTTCCTGAGGTCCATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTGTTGTTGACGGAGGAGGAGTCCAGCTGGGAAGCGTTGCACGAGCTTCTTCTCTGCTATCTTGCGCTCAACCAGAAGAGCACTCACAAGTTCATTCTTCGTGCTTTTTCTGATCTTCTCGTCACTGTCATGTCATTCTCTTCTCCTTCTTCTTCTCCGCCGCCGCCGCCGCCGCCGCCAAATTTCAATCTAAGCGGTGGTGGCGGTGGGTGTAAGAAATCTTAG 726 0.5262 MQESESDVTRKRRSNYHNLRRLNLCFSSSTFTQPQTHPITSSSSSSSSLPQQQQHHNRPSPTTNATSSIMINNFNTTFYHHHHHTSSSSSSNQIEPEPESKPADFATAFASQRFFFSSPGRSNSIIERANTNSTAILDGSVAVPTYSPDPYADFLRSMQEMVEARPELLLTEEESSWEALHELLLCYLALNQKSTHKFILRAFSDLLVTVMSFSSPSSSPPPPPPPPNFNLSGGGGGCKKS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1113 241 MobiDBLite consensus disorder prediction 80 101 - -
Lja1g1113 241 Pfam Transcriptional repressor, ovate 147 210 IPR006458 -
Lja1g1113 241 PANTHER TRANSCRIPTION REPRESSOR OFP12 19 216 - -
Lja1g1113 241 MobiDBLite consensus disorder prediction 30 67 - -
Lja1g1113 241 MobiDBLite consensus disorder prediction 216 230 - -
Lja1g1113 241 MobiDBLite consensus disorder prediction 80 97 - -
Lja1g1113 241 ProSiteProfiles OVATE domain profile. 143 209 IPR006458 -
Lja1g1113 241 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 141 210 IPR006458 -
Lja1g1113 241 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 19 216 IPR038933 GO:0045892
Lja1g1113 241 MobiDBLite consensus disorder prediction 214 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1113 Lja-Chr1 11306081 11306839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja1g1113 Ovate 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1113 - - lja:Lj0g3v0324199.1 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1113 1 11306081 11306839 Lja5g1966 5 25136786 25137877 PCT