Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1097 ATGGAGCAGTATGAAGTTCTAGAGCAGATTGGCAAAGGTTCATTTGGTTCTGCTCTGCTTGTGAGGCACAAACACGAAAAGAAACTGTATGTTCTCAAGAAGATCCGCCTTGCTCGCCAAAGTGACAGAACCCGTCGGTCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAACCCATTTATTGTGGAGTACAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATTGTCGGCTATTGTGAAAGAGGAGATCTGGCTGACGCTATAAAAAAGGCTAATGGTGTCAACTTTCCTGAAGAGAAGCTTTGCAAGTGGCTTGTCCAGTTGCTTATGGCTCTGGATTACTTACATGTAAATCACATTCTTCATCGTGATGTTAAGTGTTCAAATATATTCTTGACAAAAAATCAAGATATACGTCTAGGTGATTTTGGTCTTGCTAAAATGTTGACATCTGATGACCTTGCTTCCTCAATTGTTGGGACCCCAAGTTATATGTGCCCGGAGCTGCTTGCTGATATACCCTATGGCTCCAAGTCAGATATCTGGTCTTTGGGATGCTGTATTTATGAAATGGCTGCTCTAAAGCCTGCTTTTAAAGCTTTTGACATACAAGCGTTGATTAACAAAATAAACAAGTCTATAGTAGCTCCACTGCCAACTATGTACTCTAGTGCTTTTCGAGGGCTAGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCACCTGCTTCAGAGTTACTAAATCATCCACATCTTCAACCTTACATTCTTAAAATTCACCTAAAGTTAAATAGCCCAAGAAGAAGTACTTTTCCATTCCAATGGCCTGAGTCAAACTACATGAGGAGAACTCGGTTTGTAGTGCCAGACTCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTAAGCAATGACAGGTCCTTGAATCCTAGTATTTCTGGAACTGAACAAGATTCTCAGTGTTTCACTCAAAAGGCCCATGGATTATCCACTTCTTCAAAGGAGGTGTATGAAGTATCTGTTGGCGGTGCCTGTGGTCCGTGGAATACTAACAAAACAAAGTCCCCAACTGTTGAGAGAACACCAAGATCAAGAGCAGATAAAGACTCCACCGCTGCCAGAAGGCAGACGATGGGACCATCCAAAATATCCCGTTCTGGTTCAAAGCATGATACACTTCCAGTCTCTCATGCACCATCTGTGAAGTTTCCCCCACCAACTCGTAGAGCATCCCATCCACTGCCTACAAGAGCCTCGATGGCCAAAGCAACCCTTTACACCAATGTTGGCACCTTTCCAAGAGTGGACTCTGATGTTTCTGTTAATGCGCCACAAATTGACAAGATTGCAGAATTTCCATTGGCCTCTTGTGAGGATCTTCCTTTCTTCCCTGTTCATGTACCATCATCAACATCAGTCCACTGCTATTCTAGCTCAGCTGGGAGTGCTTATCGCTCCATCACAAAGGAAAAGTGTATTCATGAGGACAAAGTTACTGTCCCTGGTGGTTCATGTCCAAAGGGAAGTGAATGCTCTAAGCATGTGACAGCTGGTGTTTCGATCCATTCCTCTGCTGAGTTGCATCAGCGTCGGTTTGACACCTCGTCATACCAGCAGCGTGCGGAGGCATTGGAGGGTTTGCTGGAGTTCAGTGCCAGGCTTCTACAACACCAGAGGTTTGACGAGCTTGGGGTGTTGCTAAAGCCATTCGGGCTTGAGAAGGTTTCTCCAAGGGAAACTGCTATTTGGTTGGCCAAGAGCTTTAAAGAAACTGTGATCTAA 1806 0.4413 MEQYEVLEQIGKGSFGSALLVRHKHEKKLYVLKKIRLARQSDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIVGYCERGDLADAIKKANGVNFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKNQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAALKPAFKAFDIQALINKINKSIVAPLPTMYSSAFRGLVKSMLRKNPELRPPASELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYMRRTRFVVPDSVSTLSDQDKCLSLSNDRSLNPSISGTEQDSQCFTQKAHGLSTSSKEVYEVSVGGACGPWNTNKTKSPTVERTPRSRADKDSTAARRQTMGPSKISRSGSKHDTLPVSHAPSVKFPPPTRRASHPLPTRASMAKATLYTNVGTFPRVDSDVSVNAPQIDKIAEFPLASCEDLPFFPVHVPSSTSVHCYSSSAGSAYRSITKEKCIHEDKVTVPGGSCPKGSECSKHVTAGVSIHSSAELHQRRFDTSSYQQRAEALEGLLEFSARLLQHQRFDELGVLLKPFGLEKVSPRETAIWLAKSFKETVI* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1097 601 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lja1g1097 601 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1097 601 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1097 601 CDD STKc_Nek 3 258 - -
Lja1g1097 601 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 590 - -
Lja1g1097 601 MobiDBLite consensus disorder prediction 382 401 - -
Lja1g1097 601 MobiDBLite consensus disorder prediction 366 380 - -
Lja1g1097 601 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Lja1g1097 601 PANTHER SERINE/THREONINE-KINASE NEK4 1 590 - -
Lja1g1097 601 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja1g1097 601 SUPERFAMILY Protein kinase-like (PK-like) 1 320 IPR011009 -
Lja1g1097 601 MobiDBLite consensus disorder prediction 356 421 - -
Lja1g1097 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lja1g1097 601 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1097 Lja-Chr1 10926311 10933340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1097 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 3.66e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja1g1097 Pkinase 6.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1097 K08857 - gmx:100805201 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1097 1 10926311 10933340 Lja1g1097 1 10926311 10933340 ECH
Lja1g1097 1 10926311 10933340 Lja5g1945 5 24328761 24332837 PCT