Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1092 ATGAACTATCTATACCCAGTGAAAGAAGAGTACTTGGAGTTTGAACCAACATCATCAGCATCTCACAGTCACAGTGGAGGTGATGATCAATCAATGGTGGTTGCTCCACGGCCAATGGAGGGGCTTCATGAGGTGGGGCCACCCCCATTTCTGACCAAGACATTTGATGCAGTGGAGGACCCCACAACCAGCCATATAGTTTCATGGAGCAGGGGAGGTGCTAGTTTTGTGGTTTGGGATCCACACACTTTCTCCAGGGAACTTCTTCCTAGATACTTCAAGCACAACAACTTCTCAAGCTTTGTCAGACAACTAAACACTTATGGCTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCTTCAGAGGGCACAGGCACCTGTTAGCAAACATAAGGAGAAGGAAGCACCCTTCTCAGCCAACACCTTCCCAACAACAAGCACCAGATCACTGTGTTGAAGCTGGTCGTTTCGGATTGGATGAAGAAATCGATCGTTTGAGGCGTGACAAGCAAGTTTTGATGATGGAGCTTGTGAAGCTCAGACACCAGCAACAGAACACAAGATCATACCTTCAAGAAATGGAGGAAAGGTTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCAATGCAAAATCCAGCTTTCATTCAGCAGCTACTCCAACAGAAGCAGAAGAGAAAGGAGCTTGAAGAGGCCATGACTAAGAAGAGGAGAAGGCCAATTGAGCATGGAACTTGTGCTAGTGGTGTTGGGGGATCAAGAAGCAGTGTTAAAGTTGAAGTTCCAGCTTTTGGGGAATTTGGATTCGGTGTGTCAGCTGGAAGTGTTAGCCATGGAAATGCAAGGTTTTGGTAG 888 0.4572 MNYLYPVKEEYLEFEPTSSASHSHSGGDDQSMVVAPRPMEGLHEVGPPPFLTKTFDAVEDPTTSHIVSWSRGGASFVVWDPHTFSRELLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFFRGHRHLLANIRRRKHPSQPTPSQQQAPDHCVEAGRFGLDEEIDRLRRDKQVLMMELVKLRHQQQNTRSYLQEMEERLRGTEIKQQQMMAFLARAMQNPAFIQQLLQQKQKRKELEEAMTKKRRRPIEHGTCASGVGGSRSSVKVEVPAFGEFGFGVSAGSVSHGNARFW* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1092 295 Coils Coil 230 250 - -
Lja1g1092 295 Coils Coil 168 188 - -
Lja1g1092 295 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 13 258 - -
Lja1g1092 295 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Lja1g1092 295 Gene3D - 43 140 IPR036388 -
Lja1g1092 295 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1092 295 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 258 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1092 Lja-Chr1 10897983 10901716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1092 28 291 HSF AT3G22830 59.410 1.72e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja1g1092 HSF_DNA-bind 5.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1092 K09419 - gmx:100811798 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1092 1 10897983 10901716 Lja5g1938 5 24216687 24219564 PCT