Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1091 ATGTTCACCACAACTATTACCAATTCAACTTCTATGTCCGAGGGTGCCACTGTTTCTTCTGGTACAAGAGTTCAATACTTGAGTGGGCTAAATCAAGTGGTATCAACAATTTCTGATCCTCAGCAGCCTCGAAAGATCAAGAAAAAGAGAAGCCTTCCAGGAAATCCAGACCCAGATGCTGAAATCATTGCTTTGTCTCCAAAGGCACTCCTAGCCACAAATAGATTTGTTTGTGAGATCTGCCTCAAGGGTTTCCAGAGAGATCAGAACCTCCAGCTTCATAGGAGGGGCCATAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTTAAAAAGAAAGCGTACGTGTGCCCTGAACCTTCTTGCGTTCACCACAATCCATCAAGGGCTCTGGGGGATCTTACAGGAATCAAGAAACATTATTGCAGGAAGCATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAAAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGTTTCATCACTCACAGGGCATTCTGTGATGCATTGGCTGAAGAATCTGCAAAACTGTCAACAAACCAATTAACCACCACCAGCACAAACCCATTACTCCACTCTCTCATCCTCTTCCAAACCCAACAGAATTTGCAACAAAACCACCACTTCACCACCAGCTTCAGTCCCTGGTACATGGACTCACAACCACCACAACAAAACCCTAACCCCACCACACTCTCTTCTCCGTCACCCTTCGAGAACCTCCGCGTGGCGATGCAAGCGCACGCCACGTCAGCAGCGGCACACATGTCAGCCACTGCACTCCTTCAGAAGGCTGCAACCGTCGGTGCCACTGCCATCACGGGCCCAGATTCTTCTCTTTCTGCTGCTGCTGCTTGTGTCGGGGATGAACAGCAAACGTCCATGATGAGTCACGTGACTGGACTCGGCAGGGGCGAGTTTGGGATGACGAGTCAGCTCGACTCGGTGGTGCAACTGCCGGAGTACATGGCGACTTTGAAGAGTGACCACCGTCTCACGAGGGACTTTCTGGGGCTGACGGAGGATGCTGACGGCGGCGGCGGCATTGACATGAAGGGCGTGCTTAACTTCACTGGAGACATGCTTAACCACCATCAAGCTCATCACTATCACCATCACCATCACCATCACCGCTTGTTGAAGCCCCAAGAACAAGGTTTTGAGTTCCTTAGGACAACCACTGCCCCGGAGACATGGGGGAATTGTTGA 1308 0.4946 MFTTTITNSTSMSEGATVSSGTRVQYLSGLNQVVSTISDPQQPRKIKKKRSLPGNPDPDAEIIALSPKALLATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESAKLSTNQLTTTSTNPLLHSLILFQTQQNLQQNHHFTTSFSPWYMDSQPPQQNPNPTTLSSPSPFENLRVAMQAHATSAAAHMSATALLQKAATVGATAITGPDSSLSAAAACVGDEQQTSMMSHVTGLGRGEFGMTSQLDSVVQLPEYMATLKSDHRLTRDFLGLTEDADGGGGIDMKGVLNFTGDMLNHHQAHHYHHHHHHHRLLKPQEQGFEFLRTTTAPETWGNC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1091 435 MobiDBLite consensus disorder prediction 247 268 - -
Lja1g1091 435 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lja1g1091 435 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Lja1g1091 435 MobiDBLite consensus disorder prediction 38 59 - -
Lja1g1091 435 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 408 - -
Lja1g1091 435 SMART c2h2final6 76 98 IPR013087 -
Lja1g1091 435 SMART c2h2final6 152 172 IPR013087 -
Lja1g1091 435 SMART c2h2final6 117 147 IPR013087 -
Lja1g1091 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Lja1g1091 435 Gene3D Classic Zinc Finger 109 202 - -
Lja1g1091 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1091 Lja-Chr1 10888336 10891988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1091 16 397 IDZ Gene Family AT4G02670 52.430 3.80e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1091 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1091 K25870 - gmx:100812334 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1091 1 10888336 10891988 Lja5g1446 5 14538768 14544031 PCT
Lja5g1932 5 23949848 23953802 Lja1g1091 1 10888336 10891988 PCT