Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1088 ATGCTACCAAAATCCACCATGTCTAGCAGCCATGATATGAAATATGATGGAAGCTCATTTCTCATTGATATCACCAGTGCCATTACCAAAGTCACTGGTAATTACAGCATTAGCAATGCCAAAAGAAGGTGGCGTTTTGCTTATGTAGCAATTTATTCTAGAAGGGTAATGCTTTCCCTGGCCAAAGAGATCATATCCAAAAGAAACTCCCATTATGTGAGCAAGGGAACCAATCATTGTTCTCTTGTTCCTCATGATGTCGATAAAGCCAGGCTTTCTAACATGGTCAAGGACAAAAATTTGGAAGCATATAGTGAATTTGGAGGGGTTGAAGGTGTTGCAGATGTTCTTGGAACAATACCAGCAAAGGGAATCCTTGGCAGTGATGATGACACTGCCGCGAGGCGCGAGTTGTTTGGTACAAATACTTACGTGAGGCCACCGCCGAAAATCTTCCTACACTTTGTGCTGGAAGCTTTGAATGACACCACTATTCTCATCCTTCTTGGTTGTGCTGGCCTTTCCCTTGGTTTTGGCATCAAAGAGCATGGACCTGGGGAAGGCTGGTATGAAGGTGGGAGCATATTTTTGGCAGTGTTTCTGGTGGTGGTGGTCAGTGCACTCAGCAATTTCAGACAAGATAGACAATTTGACAAATTGTCCAAGATCAGCAATGACATTAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAACAGATATCCATCTTTGATGTCCTTGTGGGAGATGTTATTTATTTGAAAATTGGAGATCAAATTCCAGCTGATGGATTGTTCTTGGGTGGCCATTCTTTGCAGGTGGATGAATCAAGCATGACAGGGGAGAGTGACCATGTAGAAATTGAGCCATTGAAAGCCCCTTTCTTGTTATCTGGTGCCAAGGTGGTGGATGGCTATGCTCAAATGCTTGTGACAGCTGTGGGAGCCAACACAGCATGGGGTCAAATGATGAGCTCAATATCCGGCGACAACAGCGAGAGAACACCATTACAAGCTCGCCTCGACAAGCTGACCTCTTCTATTGGTAAAATTGGCCTAGCAGTAGCATTTCTTGTTCTTCTCGTGTTGTTAATTCGCTACTTCACAGGAAACACAGAAGATGAGAATGGGAATAAGGAGTACAAGGGGAGCAAAACCGATATAAACGACGTGTGTAACGCGGTTGTGAGCATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCTGAAGGTCTGCCATTGGCTGTGACTCTCACACTAGCTTACTCCATGAAAAGAATGATGGCTGATCAAGCAATGGTGAGGAAGCTTTCAGCTTGTGAAACCATGGGGTCAGCAACTGTTATCTGCACAGATAAAACTGGCACATTGACATTGAATCAGATGAGAGTGACAAAATTCTGGCTAGGACTAGAAAATGTTGTAGAGAATTTTTCCAATGCAATGGCCCCAACTGTTCTGGAGCTATTCCACCAGGGGGTAGGCCTCAATACAACGGGTAGTGTATACAAGCCTTCAGCAGAATCTGAACCTGAAATTTCAGGTAGCCCAACAGAGAAAGCTATGCTCTTGTGGGCTGTCTCTGATTTAGGTATGGACATGGATGAACTGAAGCAGAAGCATAAGGTTCTTCATGTTGAAACATTTAACTCAGAGAAGAAGCGAAGTGGCGTCGCGGTAAGGAAAGAGACCAATAACACTGTTCACGTGCATTGGAAAGGAGCTGCAGAGATGGTACTTGCAATGTGTTCTAATTACATTGATAGTAACGGCACACAGAAGTCGCTTGATGAAGAAAGGAGTAAAATTGAGAAGATAATTCAAGGAATGGCAGCTAGTAGCCTAAGGTGCATTGCTTTTGCTTACATGGAGATTTCAGAAGGTGGTGATTATATAGAGAAGGGGAAACCGCGTCAAGTCCTGAGAGAAGATGGTTTGACATTGCTTGGGATTGTTGGCCTCAAGGACCCATGCAGGCCAAACGTTAAGAAAGCTGTAGAAACTTGCAAGCTTGCAGGAGTTGATATTAAGATGATCACTGGAGATAACATATTCACTGCAAAGGCAATTGCAACCGAATGCGGAATATTAGATCTTAATGATGCGGGAGGAGTGGTGGTGGAAGGTGTCGAGTTCCGAAACTATACCGAGGAGGAAAGAATGGAGAAAGTTGATAAGATCCGTGTGATGGCGAGATCATCCCCTATGGACAAGCTTTTGATGGTGCAGTGCTTGAAAAAGAAAGGCCATGTAGTTGCAGTCACAGGAGATGGCACAAATGATGCACCTGCTCTGAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCAAAGGAAAGTTCCGACATTGTCATTTTGGACGACAACTTCAATTCCGTCGCCACTGTTTTAAGGTGGGGAAGGTGTGTTTACAACAACATCCAGAAATTTATCCAGTTTCAACTAACTGTGAATGTTGCAGCTCTTGTGATCAATTTTATAGCAGCAGTTTCTTCTGGAGATGTGCCCTTAACAACAGTTCAACTACTTTGGGTGAATCTCATCATGGATACTCTAGGTGCTCTTGCACTTGCCACAGAAAGACCTACTAAGGAGTTAATGCAGAAAAAGCCAATAGGAAGAACAGAACCTCTTATTACTAAGATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTGTTCTCTTGGTCTTTCAATTCTATGGAAAGTCAATCTTCAATGTAAGTAAGGAGGTAAAGAATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAATGAGTTCAACTCGAGAAGTATGGAGAAGCTTAACGTATTTGAAGGCATTCTCAAAAACCATCTGTTTCTTGGAATTGTGGGGATTACTATTGTTCTTCAAGTGTTGATGGTGGAGCTGCTAAGGAAGTTTGCTGATACAGAGAGATTAAACTGGGAGCAGTGGGGAATTTGTATTGGGATTGCAGCTGTGTCATGGCCTATAGCTTGGTTAACAAAGCTCACACCTGTTCCCAGTAAACTGTTCTTCACCAATGCTAAGTGGGTAAAATCTAGTCTTCAAGATTAA 3096 0.4296 MLPKSTMSSSHDMKYDGSSFLIDITSAITKVTGNYSISNAKRRWRFAYVAIYSRRVMLSLAKEIISKRNSHYVSKGTNHCSLVPHDVDKARLSNMVKDKNLEAYSEFGGVEGVADVLGTIPAKGILGSDDDTAARRELFGTNTYVRPPPKIFLHFVLEALNDTTILILLGCAGLSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVSALSNFRQDRQFDKLSKISNDIKVEVVRNGRPQQISIFDVLVGDVIYLKIGDQIPADGLFLGGHSLQVDESSMTGESDHVEIEPLKAPFLLSGAKVVDGYAQMLVTAVGANTAWGQMMSSISGDNSERTPLQARLDKLTSSIGKIGLAVAFLVLLVLLIRYFTGNTEDENGNKEYKGSKTDINDVCNAVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVVENFSNAMAPTVLELFHQGVGLNTTGSVYKPSAESEPEISGSPTEKAMLLWAVSDLGMDMDELKQKHKVLHVETFNSEKKRSGVAVRKETNNTVHVHWKGAAEMVLAMCSNYIDSNGTQKSLDEERSKIEKIIQGMAASSLRCIAFAYMEISEGGDYIEKGKPRQVLREDGLTLLGIVGLKDPCRPNVKKAVETCKLAGVDIKMITGDNIFTAKAIATECGILDLNDAGGVVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKKPIGRTEPLITKIMWRNLLAQALYQIAVLLVFQFYGKSIFNVSKEVKNTLIFNTFVLCQVFNEFNSRSMEKLNVFEGILKNHLFLGIVGITIVLQVLMVELLRKFADTERLNWEQWGICIGIAAVSWPIAWLTKLTPVPSKLFFTNAKWVKSSLQD* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1088 1031 CDD P-type_ATPase_Ca_PMCA-like 133 889 - -
Lja1g1088 1031 SFLD p-type atpase 433 809 IPR044492 -
Lja1g1088 1031 SUPERFAMILY HAD-like 449 861 IPR036412 -
Lja1g1088 1031 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1088 1031 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1088 1031 PRINTS H+-transporting ATPase (proton pump) signature 604 622 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1088 1031 Pfam haloacid dehalogenase-like hydrolase 449 770 - -
Lja1g1088 1031 SUPERFAMILY Calcium ATPase, transmembrane domain M 107 1012 IPR023298 -
Lja1g1088 1031 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 655 IPR023299 GO:0000166
Lja1g1088 1031 Pfam Cation transporter/ATPase, N-terminus 108 175 IPR004014 -
Lja1g1088 1031 Pfam Cation transporting ATPase, C-terminus 841 1010 IPR006068 -
Lja1g1088 1031 Pfam E1-E2 ATPase 227 429 - -
Lja1g1088 1031 SFLD C1.7: P-type atpase like 433 809 - -
Lja1g1088 1031 PANTHER CALCIUM-TRANSPORTING ATPASE 36 1007 - -
Lja1g1088 1031 SUPERFAMILY Calcium ATPase, transduction domain A 227 325 IPR008250 -
Lja1g1088 1031 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Lja1g1088 1031 Gene3D - 461 658 IPR023299 GO:0000166
Lja1g1088 1031 Gene3D - 448 801 IPR023214 -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 274 288 - -
Lja1g1088 1031 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Lja1g1088 1031 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 478 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1088 1031 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 727 836 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1088 1031 Gene3D - 129 327 - -
Lja1g1088 1031 Gene3D - 158 1009 - -
Lja1g1088 1031 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 94 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja1g1088 1031 PANTHER CATION TRANSPORTING ATPASE 36 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1088 Lja-Chr1 10840138 10844469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1088 40 1027 Primary Pumps ATPases AT3G63380 70.664 0.0 1359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1088 K01537 - gmx:100790034 1676.76