Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1079 ATGGACACTCACGGCGGTGGGCCCCTCCGTTCTCGGAGTTCACAGTCCCCTTCTCCGTCGCACTCCGCCTCCGCCTCCGCCACCTCATCAATCCACAAGCGCAAGCTCGTCTCTGAGGACCACGTGCCTCCCTTCCCCCCTTCCTCCTTCTCCGCCGACACCCGCGACGGCGCCCTCACCTCCAACGACGACCTTGAGAGCATCTCTGCCCGCGGCGCCGACTCCGACTCCGACGAAGACTCCGAAGACGCCGTCGTCGACGACGAGGAGGATGACTACGACAACGAATCCTCCATGCGCACATTCACCGCATCCAGGCTCAACAACAAACCCACCGCTCCCCGCAACTCCAAGCTCAAGTCCGATAACCACTCCGCCTCTGTCAAAATTGAGAACACCGACGCCGCCAAGGACGCCGGAACCGCCGTTAACGGTGCTTCAGGCGCTGGTGGATCCGTTGCCGGCATTGTGGTAAAGGAGGACGCAACTAAGATATTCACTGATAATTTGCAGACTAGTGGGGCTTACAGCGCCAGGGAAGAGAGTCTTAAGAAAGAGGAGGAAGCAGGAAAGCTCAAATTTGTATGCCTTTCGAATGATGGTGTTGATGAGCATATGATTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTCCCCAATATGCCGAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTCATTCGGCGTCATGTTGTTGGAGGCATTACTTATCGTCCATATGTGAGCCAGAGGTTTGGCGAGATAGCCTTCTGTGCAATTACAGCTGATGAGCAAGTAAAAGGTTATGGTACCAGATTGATGAATCACTTAAAACAGTTTGCACGTGAAGAAGATGGGCTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGATATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGAGCGATGGCAAGGTTATATAAAGGACTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCAAAAGCTCCCTTACACTGATTTGTCCACCATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAGATCAGAGAACTATCCAACTGTCACATTGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCGGGCGTTCCTAAAAAAATTATTGATGATATCCCTGGCTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAAGTTTAAGTGGCTGTACTGACAATGCTACAAATCAAAAACATTTGACTGCATTTATGCGTTCACTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGGACGGGATGTTCCTGATTATTATGACATAATCAAAGATCCAATGGATTTGAAGACAATGAGCAAGAGGGTGGAGTCAGAACAATATTATGTTACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTGCTTCAAGGCTAGAAGCTCACTTCCAAAGCAAAGTGACAGCTGGCCTACAGTCTGGCCCCAAAATTCAGTAG 1623 0.4744 MDTHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLVSEDHVPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDEDSEDAVVDDEEDDYDNESSMRTFTASRLNNKPTAPRNSKLKSDNHSASVKIENTDAAKDAGTAVNGASGAGGSVAGIVVKEDATKIFTDNLQTSGAYSAREESLKKEEEAGKLKFVCLSNDGVDEHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRHVVGGITYRPYVSQRFGEIAFCAITADEQVKGYGTRLMNHLKQFAREEDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKERWQGYIKDYDGGILMECKIDQKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGVPKKIIDDIPGLREAGWTPDQWGHSRFRSLSGCTDNATNQKHLTAFMRSLLKSMHDHADAWPFKEPVDGRDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFANARTYNSPETIYYKCASRLEAHFQSKVTAGLQSGPKIQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1079 540 Pfam Bromodomain 437 519 IPR001487 GO:0005515
Lja1g1079 540 MobiDBLite consensus disorder prediction 1 126 - -
Lja1g1079 540 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 192 345 IPR000182 GO:0016407
Lja1g1079 540 PANTHER BNAC04G26160D PROTEIN 9 540 - -
Lja1g1079 540 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 205 350 IPR016181 -
Lja1g1079 540 SUPERFAMILY Bromodomain 420 529 IPR036427 GO:0005515
Lja1g1079 540 MobiDBLite consensus disorder prediction 53 68 - -
Lja1g1079 540 MobiDBLite consensus disorder prediction 8 32 - -
Lja1g1079 540 MobiDBLite consensus disorder prediction 98 121 - -
Lja1g1079 540 ProSiteProfiles Bromodomain profile. 444 515 IPR001487 GO:0005515
Lja1g1079 540 PANTHER GH11602P 9 540 IPR037800 GO:0004402
Lja1g1079 540 MobiDBLite consensus disorder prediction 76 95 - -
Lja1g1079 540 PRINTS Bromodomain signature 461 477 IPR001487 GO:0005515
Lja1g1079 540 PRINTS Bromodomain signature 496 515 IPR001487 GO:0005515
Lja1g1079 540 PRINTS Bromodomain signature 447 460 IPR001487 GO:0005515
Lja1g1079 540 CDD Bromo_gcn5_like 432 531 - -
Lja1g1079 540 Gene3D - 188 351 - -
Lja1g1079 540 SMART bromo_6 425 534 IPR001487 GO:0005515
Lja1g1079 540 CDD NAT_SF 240 292 - -
Lja1g1079 540 Gene3D - 420 535 IPR036427 GO:0005515
Lja1g1079 540 ProSitePatterns Bromodomain signature. 449 507 IPR018359 -
Lja1g1079 540 Pfam Acetyltransferase (GNAT) family 245 316 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1079 Lja-Chr1 10752267 10760103 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lja1g1079 Bromodomain 8.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1079 K06062 - gmx:100813942 916.376