Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1078 ATGGCCAACAAAGCTCAAATTCGGACAAATAATTCCGCACTCATTGCTATGATTGCAGATGAGGACACTGTGGTTGGGTTTCTGCTGGCTGGAGTGGGTAATGTTGACTTGCGAAGGAAGACAAATTATCTCATTGTGGATTCAAAAACAACTGTCAAACAAATTGAAGATGCATTCAAAGAGTTCACAACAAGGGAAGATATTGCAATAGTGTTGATAAGTCAATATGTTGCAAATATGATAAGGTTTCTAGTTGATAGCTACAACAAGCCTGTTCCTGCAATATTGGAGATTCCCTCCAAAGACCACCCTTATGATCCTGCACAAGATTCAGTTCTTTCACGAGTGAAGAACCTCTTCTCTTCTGAATCTGTGGCTTCTGGGAGACGCTAA 393 0.4071 MANKAQIRTNNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAQDSVLSRVKNLFSSESVASGRR* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1078 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 130 - -
Lja1g1078 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
Lja1g1078 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 1 130 - -
Lja1g1078 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Lja1g1078 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Lja1g1078 130 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 11 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Lja1g1078 130 SUPERFAMILY AtpF-like 15 118 IPR036906 GO:0034220
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1078 Lja-Chr1 10747129 10750574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1078 1 126 Primary Pumps ATPases(2) AT4G02620 84.921 9.48e-78 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1078 K02151 - rcu:8268880 238.81