Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1075 ATGGCCAACAACCCTTCGGACGCTCCCGCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCGCCCTTCGGCTCCGGCGACTCTGGCTTAGTCGGACCCGACATCGGACTTGCCGGTACGGCTCCGATGATGCTTCAGCTCAACTCCGCCGATCATGGCAACCATCATCACCTCGCCGCCGGTGGTCCCTTTCATGCACCTGTGTACCAGTTAGGGTTGAGCTTGGACCAAGGGAAAGTAGTAGGAGGAGGAGGGTTCTTGAAGCCCGAGGACGCTTCTGGTAGTGGAAAGCGTTTCCGTGACGACGTCGTTGATGGTAGACCTAAGAATGTTTATCATGGGCAGCCCATGTCTACTACGATGCCTGCTGCTCCCCATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCAGAAAGAATTAGGGCATTGCAAGAGCTGGTTCCAAGTGTCAACAAGACTGATAGAGCCGCCATGTTAGATGAAATAGTGGATTATGTGAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTGGAGGAAGAAGGCGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGATGGTACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGATAGCTCTAGTATGGTCAAGCCGGAAACTAATCCTCCTTCATAA 894 0.5235 MANNPSDAPAADDFLEQILGLPPFGSGDSGLVGPDIGLAGTAPMMLQLNSADHGNHHHLAAGGPFHAPVYQLGLSLDQGKVVGGGGFLKPEDASGSGKRFRDDVVDGRPKNVYHGQPMSTTMPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSMVKPETNPPS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1075 297 Pfam Helix-loop-helix DNA-binding domain 146 190 IPR011598 GO:0046983
Lja1g1075 297 MobiDBLite consensus disorder prediction 94 109 - -
Lja1g1075 297 Gene3D - 136 198 IPR036638 GO:0046983
Lja1g1075 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 200 IPR036638 GO:0046983
Lja1g1075 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 286 - -
Lja1g1075 297 SMART finulus 147 196 IPR011598 GO:0046983
Lja1g1075 297 MobiDBLite consensus disorder prediction 87 145 - -
Lja1g1075 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Lja1g1075 297 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1075 Lja-Chr1 10725464 10730672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1075 65 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.412 3.56e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1075 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1075 - - gmx:100797789 452.21