Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1074 ATGGGGAGCTATGAAACTGAGCTGAATCTGAAGGACACAGAGTTAAGGTTGGGATTACCTGGCTGTGATGAACTGGAGAAACGTTCATGCAAGAGATCTTCAATGGAATTGGAAGATTCCAAGTGCAAGAGCAATGTTACTACATCTAATAATGTTTCTTCTGATTCCTCAACCACAAATGAACATGACTCAGATAGTGTCCAACCTGCAAAGGTGCAAGTTGTGGGGTGGCCACCAATTCGATCTTATAGGAAGAACAGTCTACAACAGAAGAAGACAGAACAGGGTGATGGAGCTGGAATGTATGTGAAAGTGAGCATGGCTGGTGCGCCTTACTTGAGGAAGATAGATCTCAAGGTTTACAACAACTATCCAGAACTCCTCAAGGCCTTAGAGAACATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGATACAATGGATCTGAACATGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCATGTCTTCCTGTAAGAGGCTGAGAATAGTGAAAGGATCAGAAGCCAAAGGATTGTCCTGTTTGTGA 591 0.4315 MGSYETELNLKDTELRLGLPGCDELEKRSCKRSSMELEDSKCKSNVTTSNNVSSDSSTTNEHDSDSVQPAKVQVVGWPPIRSYRKNSLQQKKTEQGDGAGMYVKVSMAGAPYLRKIDLKVYNNYPELLKALENMFKCTFGEYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIVKGSEAKGLSCL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1074 196 Gene3D - 95 196 - -
Lja1g1074 196 ProSiteProfiles PB1 domain profile. 100 192 IPR000270 GO:0005515
Lja1g1074 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 194 IPR003311 GO:0005634|GO:0006355
Lja1g1074 196 SUPERFAMILY CAD & PB1 domains 96 184 - -
Lja1g1074 196 MobiDBLite consensus disorder prediction 28 71 - -
Lja1g1074 196 MobiDBLite consensus disorder prediction 40 67 - -
Lja1g1074 196 Pfam AUX/IAA family 13 194 IPR033389 -
Lja1g1074 196 PANTHER AUXIN-INDUCED PROTEIN 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1074 Lja-Chr1 10709040 10710626 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1074 91 193 B3 DNA Binding Superfamily AT2G46530 36.893 1.20e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja1g1074 AUX_IAA 1.6e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1074 K14484 - gmx:100792134 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1074 1 10709040 10710626 Lja1g1074 1 10709040 10710626 ECH
Lja1g1074 1 10709040 10710626 Lja5g1914 5 23570023 23573349 PCT