Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1072 ATGGAGCTTGGTAGTCTCATCATCAACAACAACAAGGAGATCAAGATGGGGTTTCATGAAACTGAGCTCAGGCTTGGAATTGGATTGCCTGCTGCAGCAAATAATATTGAAGAAGTTGTGAGGAAGAGAGGCTTCTCTGAGACTGAATCTGAGACTGACACAGTGGATTTGATGCTCAATCTCTCCTCTAAGGAACCAACTTCAGCTGGGGCAGATCCAAGTCAGAAACCCAAGACTAATCTGCAGAAAGAGAAGACACTTTTGCCTGCAGATCCTGCCAAGCCTCCAGCCAAGGCGCAAGTGGTGGGTTGGCCACCTGTGCGGTCGTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCGTTGGAGAGGAGAGTGGTGGTGAGAAGAGCAATAATGGTGGCGGCGGCGGCGGTGCGAGCTTTGTCAAGGTGAGCATGGATGGAGCACCTTACCTTCGCAAAGTGGACTTGAAGATGTACAAGAGTTACAGAGACCTTTCTGATTCCTTGGCCAAAATGTTCAGCTCCTTCACCATTGGCACTTGCGAGTCGCAAGGGATGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTATTGAACAGCTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAAGCCATTGGTCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 774 0.4832 MELGSLIINNNKEIKMGFHETELRLGIGLPAAANNIEEVVRKRGFSETESETDTVDLMLNLSSKEPTSAGADPSQKPKTNLQKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESGGEKSNNGGGGGGASFVKVSMDGAPYLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1072 257 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 250 - -
Lja1g1072 257 Pfam AUX/IAA family 37 248 IPR033389 -
Lja1g1072 257 ProSiteProfiles PB1 domain profile. 139 239 IPR000270 GO:0005515
Lja1g1072 257 Gene3D - 136 251 - -
Lja1g1072 257 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 250 IPR003311 GO:0005634|GO:0006355
Lja1g1072 257 SUPERFAMILY CAD & PB1 domains 136 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1072 Lja-Chr1 10686596 10690532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1072 140 242 B3 DNA Binding Superfamily AT3G61830 33.981 2.10e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja1g1072 AUX_IAA 2.1e-83 CL0072