Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1065 ATGCCGAATCCGGTGGTGAAGGTGAGGTGGAACACGATTGCAGCATGCATGACTTGCCCACTCTGCAACAAGCTATTCAAAGAAGCCACTACCATATCAGAGTGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAACTTTCAGATGAGGAATTGGAATGCTGTCCAATTTGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTGAGGCCAGACCACAATTTGCAAGATATGAGGGCCAAAATTTTCCCCTTAAAGGGAAGAAAGGCGAAGGCACCTGAAGTTGCCCCCTCAGTACCATTACCCGCTAGAAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTGATCACACCAAGGGTATCCGCGCAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCTCTAGTTTTTCCATCGAAAAGCCCATTAAAAAAGAGGAAGTATCAGGAGATCATCCTGAGAGTTCAAGCTCGCGGGACACTTCAAATAAGCTTCCTCAGAATACTGAACAGAGTTCGTCACCTTGCGGCGGTAGTCAATCCAAACCCAATAAAGAATCAGAGAATAGTGCCGAACCGTGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTTTTTAGTAGAGGTTGCTAGTAGGAGTAAATCTTTCAAGTCTAATGCGCAAGGGTCTGATGCTAAGCTAGAACCCATTCCAGTAAATGAGAGTGACTCTCAAGTGCAGAAAACCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGAATGAAAGGATTAGCCCTCATCTTGTCTCTTCAGATACATCAAAACCTAATAAGTTGCGCAGAATACGGAAGAAAAAGGAGCCTGCTCTTGGGGAATCAGGCATATCACCCCAGGCTGTGCTGCATTCTTCGAGCAATAAACTCTTAAGGGATGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTGCCCCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCTTACCTGTCTCATTTATCCAGAAGTACCTAATGAAGAAACTAGATCTGTCCAGTGAATCAGAGGTTGAAATTAAATGTATGGGACAACCAGTGATCCCTACACTGCGGCTACACAATTTGGTCGAGTTGTGGCTCGATTCAGCAGCCTCCTCATCGCTCCGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGCTCGGAAGGTTTCACACCCTTGA 1287 0.4452 MPNPVVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKLSDEELECCPICNIDLGCVPLEKLRPDHNLQDMRAKIFPLKGRKAKAPEVAPSVPLPARRKERSLSSLVVITPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPIKKEEVSGDHPESSSSRDTSNKLPQNTEQSSSPCGGSQSKPNKESENSAEPWDAKLDLWKPLNFLVEVASRSKSFKSNAQGSDAKLEPIPVNESDSQVQKTKNKENKRKAKVENERISPHLVSSDTSKPNKLRRIRKKKEPALGESGISPQAVLHSSSNKLLRDGPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSLPVSFIQKYLMKKLDLSSESEVEIKCMGQPVIPTLRLHNLVELWLDSAASSSLRIPATIGSSAKDFVMVLAYARKVSHP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1065 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Lja1g1065 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 424 IPR044807 GO:0004842
Lja1g1065 428 MobiDBLite consensus disorder prediction 149 168 - -
Lja1g1065 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Lja1g1065 428 MobiDBLite consensus disorder prediction 250 264 - -
Lja1g1065 428 SMART ring_2 19 59 IPR001841 -
Lja1g1065 428 MobiDBLite consensus disorder prediction 226 264 - -
Lja1g1065 428 MobiDBLite consensus disorder prediction 123 147 - -
Lja1g1065 428 MobiDBLite consensus disorder prediction 169 197 - -
Lja1g1065 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Lja1g1065 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 103 IPR013083 -
Lja1g1065 428 SUPERFAMILY RING/U-box 12 84 - -
Lja1g1065 428 MobiDBLite consensus disorder prediction 123 202 - -
Lja1g1065 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1065 Lja-Chr1 10634552 10640807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1065 5 346 C3H Transcription Factor Family AT2G30580 52.907 1.17e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1065 K16277 - gmx:100815540 691.034