Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1063 ATGGAGGAGGTTGAAGAAGCTAACAGGGCAGCTGTTGAGAGCTGTCATAGAGTCATAAGTATGTTGTCTCAGCCTCAGGATCAAGTTGAGTATAAGAATTTAATGGTGGAGACTGGAGAAGCTGTGAAGAAGTTCAAGAGAGTTGTTTCCCTTCTCAGTAATGGTGGTGTGGGTCATGCAAGAGTCAGGAAGTTGAAGAAACTTCCAATCCCTTTTTCTCAAAGCATCCTTAAGGACAACCCAAATTGCAAAACCAATCACAACCAGTCAAAAACTTTTGAGTTTCCTCAAATTGGTTTTCCTGACAATTCAGTTCAGGAATTGGGTTCAAGCGTTAGAAGTTCAATCTGTCTGGGAAATGGTAATCCGTCTTTGGAATTGAGCTCGAACGGGAAAAATCCTCTTGTCATTGCCCAACAACCCTTATCAACTCACTACAACATCCTTCAGCAGCAGCAGCAGTTGCAAAGGTTGTCATGGCAGCAGCTACAAATGAAACAGCAAGCGGAAATGATGTTCCGGAGAAAGAATGGTGTTATAAATCTGAATTTCGATAACTCTAGCTGCACACCGTCAATGTCATGTACCAGGTCTTTTGTTTCTTCCTTGAGCATAGATGGAAGCTTGGCTAACATGGATGGAAGTGCCTTCCAATTAGCAGGAGCTGCACACCCTTCTGATCAGAATTCAGAACAGCACAAGAGAAAATGTTCTGCCGGAGGTGATGAGGGTAGCACAAAATGTGGGAGCAGTGCTAAATGCCATTGTTCAAAGAAGAGGAAGCATAGAGTGAAAAGATCAATTAAGGTGCCTGCTGTCAGCAACAGAATTGCAGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATCAAGGGTTCACCTCACCCTAGGGGATACTACAAATGCAGCAGCGTGAGAGGCTGCCCTGCAAGGAAGCATGTTGAGAGGTGCTTGGATGAGCCTTCCATGCTAATTGTTACCTATGAAGGAGACCACAACCACCCCAAGTTACCATCACAATGTGCAAATGCTGCAGAGCTTAACCAAGATCAAGCTCCATCATTTAATTTGTCAAAACCTCTTGAGCCTTGA 1107 0.4408 MEEVEEANRAAVESCHRVISMLSQPQDQVEYKNLMVETGEAVKKFKRVVSLLSNGGVGHARVRKLKKLPIPFSQSILKDNPNCKTNHNQSKTFEFPQIGFPDNSVQELGSSVRSSICLGNGNPSLELSSNGKNPLVIAQQPLSTHYNILQQQQQLQRLSWQQLQMKQQAEMMFRRKNGVINLNFDNSSCTPSMSCTRSFVSSLSIDGSLANMDGSAFQLAGAAHPSDQNSEQHKRKCSAGGDEGSTKCGSSAKCHCSKKRKHRVKRSIKVPAVSNRIADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCLDEPSMLIVTYEGDHNHPKLPSQCANAAELNQDQAPSFNLSKPLEP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1063 368 Gene3D WRKY domain 269 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g1063 368 SMART WRKY_cls 281 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g1063 368 Pfam Plant zinc cluster domain 234 279 IPR018872 -
Lja1g1063 368 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 348 IPR044810 GO:0003700
Lja1g1063 368 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g1063 368 MobiDBLite consensus disorder prediction 221 251 - -
Lja1g1063 368 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g1063 368 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 348 - -
Lja1g1063 368 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1063 Lja-Chr1 10615893 10618409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1063 1 345 WRKY Transcription Factor Family AT2G30590 54.308 3.19e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g1063 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1063 - - jre:109020122 522.316