Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1062 ATGTCTCCTTCACCTTCGTCCATGGAGTCCCATCACTTCAGGGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGCGACCCCTGGAAGAAGACCCGCAAGTGGCTTGGCACCTTCGACACCGCTGAGGAAGCCGCCAGGGCCTACGACCACGCCGCCAGAACGCTCCGCGGCCCCAAGGCCAAGACCAACTTCTCCTACGACTCCGGCGGATTTTTCCCGCCGCATCCTGTCAAGTTCTGGGGACCTCCGGCTTTCTTCGCCGGAGTGCCGGTGAGATCGGAGTACCAGGGTTACAAGCTAGAGACTATTGCGGGTGCTGTGGTGAACAAGGAGGAGAAGAAGAAGCCCTTTTTGTTTGACCTTAACCTGCCGGCGCCGCTCCTCTGA 399 0.614 MSPSPSSMESHHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDHAARTLRGPKAKTNFSYDSGGFFPPHPVKFWGPPAFFAGVPVRSEYQGYKLETIAGAVVNKEEKKKPFLFDLNLPAPLL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1062 132 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 CDD AP2 12 68 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Lja1g1062 132 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 77 - -
Lja1g1062 132 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Lja1g1062 132 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Lja1g1062 132 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1062 Lja-Chr1 10610171 10610569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1062 7 71 AP2-EREBP Transcription Factor Family AT1G50640 81.538 1.10e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g1062 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1062 K09286 - gmx:100816599 177.948