Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1060 ATGGCGTCGACGGAAGAACCCATCGCTCCGATCATCGTGGAGGAGCCTGTCGTGGAGGAGCCGGCAGCCGCTGACCTACCTCCGGTAGCTGAGGATGAGCCTGCTCAGCCCGATCCCAACCCTACCAAGGAAGCCAAACCCAGGAAACGCTCTGCTGCTAAGAAGGCCTCACATCCTTCCTATGAAGAGATGGTGAAGGATGCGATTGTGACGCTGAAGGAGAAGAGCGGTTCGAGCCAGTACGCGATTGCGAAGTTTCTGGAGGAGAAGCACAAGCAGCTTCCATCGAACTTCAAGAAGCTTTTGCTCTTCCATTTGAAGAAGCTTGTTGCTGCTGGGAAGCTTGTGAAGGTGAAAAACTCCTTCAAGCTTCCGTCGGCGAAGTCCTCCGCCGCTGCTGCTGCTTCCAAACCGGCGGCGGCCAAGAAGAAGCCGCAGCCTGCAGCTGCCAAGTCCAAACCCAAGCCCAAGGCTAAGGCCAAGCCCGCCGCGGCGGCGACCAAGGCTAAGGCTAAGCCTGCTCCCAAGTCGAAGGCGGCGGCGACCAAGACCACCGCCAAGGCGAAGCCTGCCGCGGCGGCCAAGCCTAAGGCGAAGCCTGCTGCTAAGGCTAAGCCGGCGGCAAAGGCCAAGGCGGTTGCCGCTCCTGCTAAGGCGAAGGCTTCTCCGGCTAAGCCCAAGGCGAAGGCGAAGTCTAAGACGGCGCCTCGTATGAATGTGAATCCTCCTGTTCCGAAGGCTAAGCCTGCTGCTAAGGCGAAGCCTGCGGCGAGGCCTGCCAAGGCGTCGAGGACCTCGACGAGAACAACCCCTGGGAAGAAGGTTCCTCCTCCTCCTAAGCCTGCACCGAAGAAAGCTGCTACCCCTGTGAAGAAGGCTCCGGCGAAGAGTGGGAAGGCTAAGACTGTGAAGTCGCCGGCGAAGAGGACTGCCCCCAAAAGGGGTGGGAGGAAGTGA 957 0.5998 MASTEEPIAPIIVEEPVVEEPAAADLPPVAEDEPAQPDPNPTKEAKPRKRSAAKKASHPSYEEMVKDAIVTLKEKSGSSQYAIAKFLEEKHKQLPSNFKKLLLFHLKKLVAAGKLVKVKNSFKLPSAKSSAAAAASKPAAAKKKPQPAAAKSKPKPKAKAKPAAAATKAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKASPAKPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKAPAKSGKAKTVKSPAKRTAPKRGGRK* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1060 318 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g1060 318 PANTHER HISTONE H1.1 4 210 - -
Lja1g1060 318 MobiDBLite consensus disorder prediction 302 318 - -
Lja1g1060 318 CDD H15 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g1060 318 SUPERFAMILY "Winged helix" DNA-binding domain 54 136 IPR036390 -
Lja1g1060 318 PANTHER HISTONE H1 183 318 - -
Lja1g1060 318 MobiDBLite consensus disorder prediction 1 63 - -
Lja1g1060 318 Gene3D - 52 133 IPR036388 -
Lja1g1060 318 Pfam linker histone H1 and H5 family 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g1060 318 MobiDBLite consensus disorder prediction 125 318 - -
Lja1g1060 318 PANTHER HISTONE H1.1 183 318 - -
Lja1g1060 318 PANTHER HISTONE H1 4 210 - -
Lja1g1060 318 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja1g1060 318 PRINTS Histone H5 signature 185 202 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g1060 318 PRINTS Histone H5 signature 151 165 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g1060 318 PRINTS Histone H5 signature 207 226 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g1060 318 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja1g1060 318 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1060 Lja-Chr1 10580656 10582027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1060 62 127 Single Myb Histone (SMH) Gene Family AT1G49950 37.879 8.91e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1060 K11275 - cpap:110814810 117.472