Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1056 ATGACAGCTGAGAGGTTTTGTGAGAATGAAGAAGATAAGGCTAAGTTGGAATCTGTGTTGGGTGCTGAAGCTGTTGCCTTCTTTAGTTCGGCGGTTTCCAACGATGTTTTCGCGGATGTTATTGTTCCGCCGAGTCCTGATTTGGGTACCCACCAGCGGTTATGTCACCTTGTTGAGGTGTCCAAGTGGGACTATGCAATTTTGTGGCAGGTTGCTGGGTTGAAATCTGGTGGTTATGTCTTGAAATGGAGTGATGGGCATTGTCAGGATCCGAAAGTGGGGCAAAGGAGTGAGCAGCAGGAGGAGGAGAAGGATGGTGTCAAGAAGCAGGTGTTGCAGAAGGTTCATGCTTGTTGTGGTGGATCTGACTCGAAAGATGCCATTTTTACAAGGTTGGATAGGGTTTCAGATATGCATATGTTTTACTTGACCTCTGCGTATTACGTGTTTGGTTTTAATTCCCAGTGTGGTCCTGGCAGCTCTTTTAAGTGTAGTAAATCAATTTGGGCTTCTGAAGCTGCTAGTTGTTTAAACCAATATGAGTCAAGATCATTTCTGGCGAAACTGGCTGGTTTTCAAACTGTTGTTTTTGTGCCTTTCAAGGGTGGGGTTGTTGAGCTTGGTTCGAAGGAAATGATGCCGGAAGAACAGGGTGTTTTGGATATGGTCAGGGCAACATTTGGGGAATCTAGTTCTGCACAGGGAAAGGTGTTACCGAAGATTTTCGGGCATGAGTTAAGCCTTGGAGATACAAAATCTCAGTCCATAACTATTAGTTTCTCTCCTAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCGTATGAAGTTCAAGCGCTGGGGGTAAACCATGCTTATGGGAATTCGTCCAATGGGTGCATAGGAGACGGTGAGGCGAAAATGTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCTAGGGTTTCTAGTTTAGATTTGGGTAATGAAGACGCGTCCTCACCTCATCTTGATGACCGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCCGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCCAACATATCTAAAATGGACAAGGCGTCTCTGCTTGGCGATGCTATTACACATATCACCGATCTCCAGAAGAAGATCAAGCTTTTGGAAACTGAAAAGGACATGACTGGCAAGAAGGACCAGCAGTTGCCACTTCCGGATATTGATTTTCAGTCTAGACAGGATGATGCAGTTGTGAGAGTGAGCTGCCCCTTAGATACTCACCCCGTTTCTGGAATTGTTAAAATGTTCAGAGAGCATCAAATTGTAGCTCAAGATTCCAGCGTTTCAACTGCGCAGGATAAGGTAATTCATACATTCTCCATACGAACTCAAGGTGGGGAGGCTGCTGCTGTGCAATTGAAAGAAAAGCTTGAAGCATCTCTCTCCAAAAATTGA 1512 0.4491 MTAERFCENEEDKAKLESVLGAEAVAFFSSAVSNDVFADVIVPPSPDLGTHQRLCHLVEVSKWDYAILWQVAGLKSGGYVLKWSDGHCQDPKVGQRSEQQEEEKDGVKKQVLQKVHACCGGSDSKDAIFTRLDRVSDMHMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPFKGGVVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGVNHAYGNSSNGCIGDGEAKMFPQLNQMIPGNFNPQARVSSLDLGNEDASSPHLDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKDMTGKKDQQLPLPDIDFQSRQDDAVVRVSCPLDTHPVSGIVKMFREHQIVAQDSSVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLSKN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1056 503 MobiDBLite consensus disorder prediction 329 362 - -
Lja1g1056 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 421 IPR036638 GO:0046983
Lja1g1056 503 MobiDBLite consensus disorder prediction 312 362 - -
Lja1g1056 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Lja1g1056 503 PANTHER TRANSCRIPTION FACTOR BHLH3 3 502 - -
Lja1g1056 503 Gene3D - 344 417 IPR036638 GO:0046983
Lja1g1056 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Lja1g1056 503 MobiDBLite consensus disorder prediction 312 327 - -
Lja1g1056 503 PANTHER MYC 3 502 IPR045084 GO:0003700|GO:0006355
Lja1g1056 503 SMART finulus 357 406 IPR011598 GO:0046983
Lja1g1056 503 CDD bHLH_AtAIB_like 348 417 - -
Lja1g1056 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1056 Lja-Chr1 10548409 10550697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1056 3 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.031 1.38e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1056 bHLH-MYC_N 1.9e-40 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1056 - - gmx:100819968 730.324