Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1053 ATGGAAGGAAACTATCTAACAAGAAACTCACACAAAGGGGAAAGCTTTGGGTTTGAGGAGCACACATGGGGAACTTCATGGCCTGCAAGGAACTATTCTTGTAGCTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCTCTTGGTGGCCACATGAATGTTCATAGGAGGGATAGGGCAAGGTTGAGATCATCCTTAATGTCTTCATGGGTCTCTCATGATCAGTGTAGTACTCCTAAACCTAACCCTAGCTGCACAAAGGCTAACCCAACTCATCATATAAATCTTTCACTGCCTTCCTCATCATCAACATCATCATCATATGTATCCAATGCTCTCTTGAATTGTGCTCACCGTTCTCCACTATATTGCCCTTGTTTGACCTTGTCTTCTTCATCACTCCCTCCAGCTTCTACTAGTGGAGATAAGAAACCAAGACTTTCATCTTTCCAAATTCCTCCTTTGAATCCTCAAAATAGAGAGATCAATATGATTAAGGAAACAAAAAGTGGTTTTGGAGTTGAGGGATTACAAGATTGTGAAATATTGGAGGATGAGCACAAGGTTTTGGAGGATAGTACTGAGCAACACATCACTTTGGAGTTGGGAATAGGATTGCTTGAACATCCAAAGGAGAAGCTAGATTTGGAGCTGCGTTTGGGGCATTTCTAG 669 0.4185 MEGNYLTRNSHKGESFGFEEHTWGTSWPARNYSCSFCKREFKSAQALGGHMNVHRRDRARLRSSLMSSWVSHDQCSTPKPNPSCTKANPTHHINLSLPSSSSTSSSYVSNALLNCAHRSPLYCPCLTLSSSSLPPASTSGDKKPRLSSFQIPPLNPQNREINMIKETKSGFGVEGLQDCEILEDEHKVLEDSTEQHITLELGIGLLEHPKEKLDLELRLGHF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1053 222 MobiDBLite consensus disorder prediction 134 156 - -
Lja1g1053 222 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 12 221 - -
Lja1g1053 222 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Lja1g1053 222 PANTHER OS07G0101800 PROTEIN 12 221 - -
Lja1g1053 222 Pfam C2H2-type zinc finger 32 56 - -
Lja1g1053 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Lja1g1053 222 SMART c2h2final6 32 54 IPR013087 -
Lja1g1053 222 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Lja1g1053 222 Gene3D Classic Zinc Finger 18 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1053 Lja-Chr1 10521254 10521922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1053 20 220 C2H2 Transcription Factor Family AT3G23130 38.164 3.99e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1053 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1053 - - gmx:102660985 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1053 1 10521254 10521922 Lja5g1879 5 22693883 22694449 PCT