Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1052 ATGAACTTAGTAAGCTACCAAGAAGAGTACTCCAAGAGCTTCAGTGAAAAATCAGAGGAGAATGATGACACAGCAGGAGCTGGAAGATCTTACGAGTGTATCTTTTGCAAGAGGGGATTCACAACGGCACAGGCTTTAGGTGGACACATGAACATACACAGGAAGGACAAAGTCAACAAGTCCAAACCCTCTTTTCCTAACAAAGTTGATGACAGCAACTATGCAGAGCTAGGGTTCTATTCAGAAGTTTCAAACCACCCTCAGGGAGGTAACAATTACTATGCCAATAACTACCATCAAGTTTATTTTCCTGCAACTAGAGCTTCCAATATAGAAAACCAACAAGATTGGAGGCAGAGAAATTTGAGCTTGTATGGTAACCCTTTTTCTGTTCGAGACAACGCAGAAGATGGCCTTGATTTGGAGCTAAGATTGGGTCGTCATCCATAG 450 0.4222 MNLVSYQEEYSKSFSEKSEENDDTAGAGRSYECIFCKRGFTTAQALGGHMNIHRKDKVNKSKPSFPNKVDDSNYAELGFYSEVSNHPQGGNNYYANNYHQVYFPATRASNIENQQDWRQRNLSLYGNPFSVRDNAEDGLDLELRLGRHP* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1052 149 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Lja1g1052 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Lja1g1052 149 PANTHER OS07G0101800 PROTEIN 8 149 - -
Lja1g1052 149 Pfam C2H2-type zinc finger 31 55 - -
Lja1g1052 149 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Lja1g1052 149 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 8 149 - -
Lja1g1052 149 Gene3D Classic Zinc Finger 5 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1052 Lja-Chr1 10511778 10512414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1052 31 146 C2H2 Transcription Factor Family AT5G43540 38.211 2.19e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1052 - - lja:Lj1g3v4483360.1 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1052 1 10511778 10512414 Lja5g1878 5 22681682 22683007 PCT