Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1049 ATGGCTTCTTCTTCTTCTTCATCATCTGGAAATGGCTCTGCCTCTGCTTCTTCTGGCTCTCCTTGCGGAGCATGCAAGTTCCTCAGGAGAAAATGTGCAGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGTTGCTTTTGCATATTCCAGCTCATGATCGTTGTGAGGCGGTTGTCACAATCGCTTATGAGGCACAAGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTATGCCTTACAACAACAGGTGGCATGCTTGCAGGCTCAACTAATGCAAGTGAAGGCTCAGCTGGCGCAGAAGAACCTGAACATGGAGAATCACTGGCCAGGGAATGTTGCTGGCCAACCAATGAACCCTTTTTGTCCCTCTAACATGGACCCCATTTCACCTCAGAGCTCTCTTGACTCCATTGATCATAACATGCAAGATTTTCATAGCAGAGAAAATAATTTCTCACTCCATGCTTGTTCCAAGAAAAGAACACATAACAACAATGACTTGGGGGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAACTGA 618 0.4595 MASSSSSSSGNGSASASSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIYALQQQVACLQAQLMQVKAQLAQKNLNMENHWPGNVAGQPMNPFCPSNMDPISPQSSLDSIDHNMQDFHSRENNFSLHACSKKRTHNNNDLGELQELALRMMRN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1049 205 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Lja1g1049 205 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Lja1g1049 205 Coils Coil 101 128 - -
Lja1g1049 205 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g1049 205 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 204 - -
Lja1g1049 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1049 Lja-Chr1 10474532 10476190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1049 7 205 AS2 family AT2G42430 53.036 1.06e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g1049 LOB 1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1049 1 10474532 10476190 Lja1g1049 1 10474532 10476190 ECH
Lja1g1049 1 10474532 10476190 Lja5g1876 5 22640562 22642043 PCT