Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1048 ATGACTGGTTCTGGATCTCCCTGTGGAGCCTGCAAATTCTTGAGGAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGGAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACATCCCTGTGAGTGATCGTTGTGAAGCTGCAGTTACCATCTCATATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGTTGTGTTGCTCATATTTTTGCACTTCAACAACAGGTGGTAAATTTACAAACACAACTGGCTTATCTCAGGGAACAAGCAGCTCATAGATGTCTTAATACCTCAGCTGCTGAAAACTCTAATGAGAAGTACCTTGGAAAACCTACTAATTTTACTTTGCCCCAAGATCTTCAAAGTTGGCTCCAGATGGAAAATTCCAACATGGGTGGTCCTCAATTTCTTCCAAACTTGTCCACCAATTCTTCAACAACACAATATTATGGGAGTACTACTCTCTTGGACCCTAACCTTGTTGGGATCTATGAAAATTCAGGATTAACCATGGAAGAAAGCATCTCAGTTTCTAACTTTGATGAGAGTTGTAGCTCCATGTCCTATGACATGCAAAAGCAATGGGCCTTTCATGAAGTGCATAACATTCAGTAA 669 0.4126 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFGAIHKVFGASNVSKLLAHIPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQTQLAYLREQAAHRCLNTSAAENSNEKYLGKPTNFTLPQDLQSWLQMENSNMGGPQFLPNLSTNSSTTQYYGSTTLLDPNLVGIYENSGLTMEESISVSNFDESCSSMSYDMQKQWAFHEVHNIQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1048 222 Coils Coil 87 107 - -
Lja1g1048 222 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lja1g1048 222 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Lja1g1048 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 213 - -
Lja1g1048 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1048 Lja-Chr1 10466547 10467541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1048 7 140 AS2 family AT3G58190 69.853 1.39e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g1048 LOB 2.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1048 K13945 K13944 gmx:100816960 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1048 1 10466547 10467541 Lja1g1048 1 10466547 10467541 ECH
Lja1g1048 1 10466547 10467541 Lja5g1875 5 22612757 22613772 PCT