Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1043 ATGGCACTAAACCACAACCACTCTGCTTCAGACTCTGCCTTACCCATATTTGCCATTGTTGTGCTCTTGGCCACTGCTTTCATAGTCATCAGCTACTTAACTCTTGTCACCAAGTGTTGCTCGAATTGGCATCAAATTAACCCACTGAGATGGATTTCCAACTTGCTGCCTCAACAAAATGAAGACCCCTTCATAGCTTTCTCTCCCACCAGGATGTGGAACCAAGGACTTGATGAATCTCTCATCCAAGAAATCCCAACATTTCAATTCACAAAAGAACAAAATGGTGATCAAATTCTTCAAAGTGTCTATGGCTGTGTTGTTTGTTTAACAGAGTTCCAAGAACAGGACATGCTAAAAATTCTTCCCAATTGCAGCCATGCTTTTCATTTGGATTGCATTGACATTTGGCTTCAAAGCAATTCCAATTGCCCTCTTTGTAGGTCAAGCATCTCAGCAAACACTCACTGTGCAATTCCAATGGATCAAATCATAGCTCCAACCTCTTCTCCTCAGGATTCTCAGCTACTTTCCAACATGGGAAGTGAAGAAGATTTTGTGGTCATTGAACTTGGTGGAGGAGAAAATGGGGGAACAGTAATAGAAAGAAATGACTCAAGGGAGAGCCTAGCACATAGTAGTAGAAGTCATTCCTCAAGGAAGATGATGGTGCAGTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATGTTAGAAAAAAAGATGAACAGTTTTGCATTCAACCTATTCGAAGATCTTTCTCAATGGACTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATGGTACAAGAGAATAGACATCAAAATGATGAGGCTTGTGCTAGTGAAGGTCGTAGTGGAAGATTTCGAAGATCATTCTTTCCTTTTCGTTATGGATGGGGATCAAAAAATGTTGTCCTGCCTCTTGAGAATGGTGTTTAA 969 0.4087 MALNHNHSASDSALPIFAIVVLLATAFIVISYLTLVTKCCSNWHQINPLRWISNLLPQQNEDPFIAFSPTRMWNQGLDESLIQEIPTFQFTKEQNGDQILQSVYGCVVCLTEFQEQDMLKILPNCSHAFHLDCIDIWLQSNSNCPLCRSSISANTHCAIPMDQIIAPTSSPQDSQLLSNMGSEEDFVVIELGGGENGGTVIERNDSRESLAHSSRSHSSRKMMVQLKPRKCHHVSIMGDECIDVRKKDEQFCIQPIRRSFSMDSANDRQVYLDVQAMVQENRHQNDEACASEGRSGRFRRSFFPFRYGWGSKNVVLPLENGV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1043 322 Pfam Ring finger domain 106 148 IPR001841 -
Lja1g1043 322 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lja1g1043 322 MobiDBLite consensus disorder prediction 198 222 - -
Lja1g1043 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Lja1g1043 322 CDD RING-H2_PA-TM-RING 106 148 - -
Lja1g1043 322 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 319 - -
Lja1g1043 322 SUPERFAMILY RING/U-box 82 154 - -
Lja1g1043 322 MobiDBLite consensus disorder prediction 201 215 - -
Lja1g1043 322 SMART ring_2 106 147 IPR001841 -
Lja1g1043 322 PANTHER RING-H2 FINGER PROTEIN ATL16 5 319 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1043 Lja-Chr1 10397895 10398863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1043 8 284 C3H Transcription Factor Family AT1G04360 44.481 1.58e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1043 K19041 - gmx:100809883 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1043 1 10397895 10398863 Lja1g1043 1 10397895 10398863 ECH
Lja1g1043 1 10397895 10398863 Lja6g0063 6 1207519 1208403 PCT