Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1042 ATGAATTTTGATCCTTCTATATTCACGTTCCAAAGTCGAGAATCTTCTTCTTACTCATATGATAATACCTGGGAAGAGTTGTTTTTGTTAGACAAGCTTCCCTCCAAATCATCCTCCTCCTCCTCCATTGAAGAAATTAAATTACATGAGATCACCTCCAATGTTTTCTATAGCGGCCACGTCGAAGAAAAATATTCATCACCACCGCTGCCACTAGCACCAAGCCGAGGGAAGAGTCCTTATAGAGGAGTAAGGACAAGGCCATGGGGAAGGTACGCCGCGGAGATAAGGGACACCACAAGAAACGGGGTTCGGGTGTGGATAGGAACATTTGACACGGCTGAGGCGGCCGCTTTGGCTTATGACCAAGCAGCTTTCTTAACGCGGGGCTTTAGGGCTACCCTCAACTTCTCAGAGCAAGTAGTGAGGGAGTCCCTCCAAGAGATAGGGTTTAAGACATTGAATAATTGTCGCTCACCCTTGTTGGAACTCAAAAGGATGCATGCCTTGAGAAGTACTACAAAATCTAAGAGTAGTAGAAAGGTAAAGAAAGCTTGCAGCAACGGGGTGTTAATAGACATGACTCAAAGTGTGCTGGTATTGGAGGATTTGGGTCCTGAATATCTTGACCAACTTTTGAGCTCCACTTCCCTAGGGCAATTAAGTGATTAA 672 0.4509 MNFDPSIFTFQSRESSSYSYDNTWEELFLLDKLPSKSSSSSSIEEIKLHEITSNVFYSGHVEEKYSSPPLPLAPSRGKSPYRGVRTRPWGRYAAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGFRATLNFSEQVVRESLQEIGFKTLNNCRSPLLELKRMHALRSTTKSKSSRKVKKACSNGVLIDMTQSVLVLEDLGPEYLDQLLSSTSLGQLSD* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1042 223 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Lja1g1042 223 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Lja1g1042 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 37 216 - -
Lja1g1042 223 SUPERFAMILY DNA-binding domain 79 139 IPR016177 GO:0003677
Lja1g1042 223 Pfam AP2 domain 81 126 IPR001471 GO:0003700|GO:0006355
Lja1g1042 223 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Lja1g1042 223 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Lja1g1042 223 PANTHER DNA-BINDING DOMAIN 37 216 IPR044808 GO:0003700|GO:0009873
Lja1g1042 223 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Lja1g1042 223 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1042 Lja-Chr1 10385367 10386038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1042 44 216 AP2-EREBP Transcription Factor Family AT3G23240 44.253 1.60e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g1042 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1042 K14516 - gmx:100818907 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1042 1 10385367 10386038 Lja1g1042 1 10385367 10386038 ECH
Lja1g1042 1 10385367 10386038 Lja6g0062 6 1177135 1177851 PCT
Lja5g1864 5 22427830 22428438 Lja1g1042 1 10385367 10386038 PCT