Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1041 ATGGATTTTGATTCTCTTCTCTTCCAAAACCAAGATTTTCAATTCTTCCCTGAAAATCCTCAACTTTTCTCCTGGGAAGACAACAACAACAACAGCAACATTTTCTTCAATGATTTCACCACTCTTCTTCCCTTCAACAATTTCAGTGAGAACTCACAATCACAATCACAATCACAAACCAAGGAAACATCATCATCCTCTGACTCAATCTCAAACTCAAACTCTAACTCCAACTCTTCAGGATCTGTCTTTAGCTTTGAATCACAATCAGAAGTTTCCTCCCCCAGCAAAACTTGTGCTCCACCAGTGAGAGAAACTTATCAAGCATCATCATCACCTTCACCGCCGCCACCATCAGTTCCTAGTAAGAGGGTGTACAGAGGAGTGAGGACAAGGCCATGGGGGAAATTTGCAGCAGAGATTAGAGATTCAACAAGAAACGGTGTTCGAGTGTGGATTGGAACATTTGACACAGCTGAAGCAGCAGCTTTGGCTTATGACCAAGCAGCATTTTCAACAAGGGGTTCCCTTGCAGTGCTGAATTTCCCAGAGGAAGTTGTGAGAGAGTCAATGAAAGACATGGCTACTAAGCCTTGGGAAAAGGGAACTTCCCCTGTTTTGGCACTCAAGAGAAAGCATGCTATGAGAACAAAGAACAGTGTAAAGCCTTGTAAGAAGAAAATCAAAGGTGAGAAGGTAGAGATGATCAATGCTTGCCAAAATGTGCTGGTTTTGGAGGATTTGGGTGCTGATTATCTTGAGCAGCTTCTGAGCCTGACATCGTAG 786 0.43 MDFDSLLFQNQDFQFFPENPQLFSWEDNNNNSNIFFNDFTTLLPFNNFSENSQSQSQSQTKETSSSSDSISNSNSNSNSSGSVFSFESQSEVSSPSKTCAPPVRETYQASSSPSPPPPSVPSKRVYRGVRTRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESMKDMATKPWEKGTSPVLALKRKHAMRTKNSVKPCKKKIKGEKVEMINACQNVLVLEDLGADYLEQLLSLTS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1041 261 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Lja1g1041 261 Pfam AP2 domain 125 175 IPR001471 GO:0003700|GO:0006355
Lja1g1041 261 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Lja1g1041 261 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Lja1g1041 261 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Lja1g1041 261 ProSiteProfiles AP2/ERF domain profile. 125 183 IPR001471 GO:0003700|GO:0006355
Lja1g1041 261 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 258 - -
Lja1g1041 261 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Lja1g1041 261 MobiDBLite consensus disorder prediction 47 127 - -
Lja1g1041 261 PANTHER DNA-BINDING DOMAIN 23 258 IPR044808 GO:0003700|GO:0009873
Lja1g1041 261 MobiDBLite consensus disorder prediction 47 110 - -
Lja1g1041 261 SMART rav1_2 125 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1041 Lja-Chr1 10366474 10367470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1041 104 257 AP2-EREBP Transcription Factor Family AT3G23240 55.414 3.06e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g1041 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1041 K14516 - gmx:100779524 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1041 1 10366474 10367470 Lja1g1041 1 10366474 10367470 ECH
Lja1g1041 1 10366474 10367470 Lja5g1861 5 22265011 22265856 PCT