Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1036 ATGGGGAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGAGTCAAGAAGAAGATCTATTACTCATCAATTACATCAACACCTATGGCCATGCCAATTGGCGTGCTCTTCCCAAACAAGCTGGGTTGCTAAGGTGTGGAAAGAGTTGCAGACTTAGGTGGGCAAATTACCTCAGACCAGACATCAAACGGGGAAACTTTAGCAGAGAAGAAGAGGATGAAATCATCAATTTGCATGAATTGTTGGGAAACAGATGGTCAGCTATTGCAGCCAGACTACCAGGCCGAACAGACAATGAAATTAAAAACGTGTGGCACACCCACTTGAAGAAAAGGCTGCAGCCACAGACCAAACAAAAACAGACCAATTTGGATTTGGATGCCTCCAAATCCAACAAAGATGCCAAAAAAGAACACCAAGAAGATGAAGGGCCACGATCTCCTCAGCAATGTTCTTCTTCTAATAGTGACAACATGTCATCCCTCACCAATAGTAGCAGCATTGCTCCTAGTACTAACCATGATGACATGTCCATAAATGATGTTCACAATGTTAATTTTGATTCGCTGGAGAATAGTCTTGCATTGGATGAGGATTTCTGGTCGGAAGTTCTGTCATCTGATAATTCCGGCGAGACAAGTGGTGTTGTTCCGGCTACAACCGGTGTTGATTATCAGTTGGCATATTGTGGATGA 705 0.4383 MGRAPCCEKMGLKKGPWSQEEDLLLINYINTYGHANWRALPKQAGLLRCGKSCRLRWANYLRPDIKRGNFSREEEDEIINLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLQPQTKQKQTNLDLDASKSNKDAKKEHQEDEGPRSPQQCSSSNSDNMSSLTNSSSIAPSTNHDDMSINDVHNVNFDSLENSLALDEDFWSEVLSSDNSGETSGVVPATTGVDYQLAYCG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1036 234 MobiDBLite consensus disorder prediction 111 178 - -
Lja1g1036 234 CDD SANT 69 112 IPR001005 -
Lja1g1036 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 217 - -
Lja1g1036 234 PANTHER MYB-RELATED PROTEIN ZM1 1 217 - -
Lja1g1036 234 MobiDBLite consensus disorder prediction 149 178 - -
Lja1g1036 234 CDD SANT 16 61 IPR001005 -
Lja1g1036 234 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g1036 234 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g1036 234 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g1036 234 Gene3D - 13 66 - -
Lja1g1036 234 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g1036 234 MobiDBLite consensus disorder prediction 130 148 - -
Lja1g1036 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g1036 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g1036 234 Gene3D - 69 146 - -
Lja1g1036 234 SMART sant 66 114 IPR001005 -
Lja1g1036 234 SMART sant 13 63 IPR001005 -
Lja1g1036 234 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1036 Lja-Chr1 10311846 10313991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1036 1 226 MYB Transcription Factor Family AT2G31180 52.609 3.29e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g1036 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1036 K09422 - gmx:100775603 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1036 1 10311846 10313991 Lja1g1036 1 10311846 10313991 ECH
Lja1g1036 1 10311846 10313991 Lja6g0056 6 1069411 1071182 PCT
Lja5g1857 5 22047369 22048775 Lja1g1036 1 10311846 10313991 PCT