Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1027 ATGCATAATTCAGCGCAAATGGGTACAGCTTCAGTGAACTGTTGTATCAACAGCATTTCTCGATTCATTCATCTAGTTTCCTGCCAAAGAGTGAAACCTGTGCCCCTTCAGAAGAACTGTACTAATATGGTTGGGGTGTTGAAGCGTATGAAACCAGTGCTTGATGATGTTGTGGATTATAAAATCCCTTTAGATGAAAATCTGTACAGAGAATGTGAAGAACTGGATATGCAGGTAAATGAAGCTAGGGAGTTTATGGAAAAATGGAGCCCAAAGATGAGCAAGATTCTCAGTGTTCTTCAAAGTGGGAAATTGTTGATCAAGTTACAGAGCGCATCACTTAAGATTTGTCACATAATTGTTAAATCCCTAAAGTCACCTGCATCTGTTTCAATTTTGTCTAATCTTCAGCCCTATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCAGCAATGATCTATATAGAAGAAGCACAGAGAAATCAAAGGGATAATATTGAACCTTGCTATGAACATCTAAAGGAAATTATAGAGTCACTTGAGTTTACATCAAACCAGGAGCTCCTGAATGAAAGTATTGCTGTGGAAAAGGAAAGTTTGAATGCTGAAGTCAATAAAACAAAAGAGGATATGGATGAAATAAACCAAATTGTGTATCTGGTGTGCTACTTACGTGATTATGTAATGAAAAGTAAGAGCTCTAAAGTCAAAAGTGGTGTCTCAATCTCACCATACTTTAAATGCCCTTTATCACTGGAACTCATGGTGGATCCTGTTATTGTGGCTTCTGGTCAAACATATGATAGGCAATCCATCCAAATGTGGCTTGATCATGGGCTTACTGTTTGTCCCAAGACCCATCAGAGACTATCCCATACAAATCTCATCCCCAATTATACAGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAATAACTCTAGAAATAGTAATTCTGCCCATAATTCATCCCCCTCAGATTATTTATTGCATCAGGATTTAGACCGCATGTGTAGTTTTGGTTCTGTACATAGTAGCAATTCCAATTCAAAATCATCTTCTCAGACTGGAAATACATTTGAGAAGCAAAAGGGTGATAGCTCTTTCAGATTAAGCGATGAATCCAGTGGATGCCGAAGTGATGAGGCAGATAAGTTTCAGCAACAATCCCCTGCACCTTCAAGCAGTTATAGCAGAAGTGAATCATTTTCAAGTTCTATATCTAGTACTGATTATGTGCTTCCAGTTGCAAAAGTGGTGTCAGGGAGATCTAGTAAGCATCAAAATGTGGAGTTGTCTGGAGAAATTACTGATGGCCGTTCTGCTTCTCCTGCATGTAAAGAATTAGGGAATTTCCCTTCGTTACCACGACAGAAATTTGGAAGCCCTAGATCAGAAATTGGATGGATGGAGAATGAAAATAAGTGTAATAAGAATAACAATATTATTATTACTAGCCATTCAAAAGAAAATTCCCATCCTCTTTCCAGCTTAGGATCTGATGAAATGACCACCACATCTCATGTTAATAAGTTGATTGAAGACCTCCTCAGTCAATCGAATGAAACACAAACAGCTGCTGTAGAAGAATTGAGGCTCCTTAGCAAGCATAACATGGGAAACCGTGTCATTATAGGGCAATGCGGGGCCATCTTGCATTTACTTCCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCACTTCTGAACTTGTCAATTAATGAAGATAATAAGGCCTTGATTATGGAAGCAGGAGCCGTAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATAGTGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCTGTAGTAAGTAACAATAAGGAAAAAATCGGTCGTTCTGGTGCAGTTAAAGCTTTAGTGGATCTTCTAGCCTCAGGAACTCATAGGGGGAAGAAGGATGCTGCTACTGCTTTATATAACCTATCAGTATTTAATGAGAATAAGGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGCTGTTGGACCCTGCTGATGGGATGGTTGACAAGGCCGTTGCTCTTTTGGCAAACCTATCGACAATTGCAGAGGGTCGATTACATATTGTAAGGGAAGGTGGCATCCCTTTACTGGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTGCATTCTTTTGCAACTATGCCTTCATAGTTATAAGCTTTGTACCCTGGTGCTCCAAGAAGGAGCTGTACCTCCTCTAGTTGCATTATCTCAGTCTGGTACACCAAGAGCAAGAGAAAAGGCACAACAGCTTCTCAGTCATTTTCGGAATCAGCGTGAAGGAGCTAGGGGGAAGGGAAAATCATAA 2403 0.3995 MHNSAQMGTASVNCCINSISRFIHLVSCQRVKPVPLQKNCTNMVGVLKRMKPVLDDVVDYKIPLDENLYRECEELDMQVNEAREFMEKWSPKMSKILSVLQSGKLLIKLQSASLKICHIIVKSLKSPASVSILSNLQPYMQELQCLKKEPAMIYIEEAQRNQRDNIEPCYEHLKEIIESLEFTSNQELLNESIAVEKESLNAEVNKTKEDMDEINQIVYLVCYLRDYVMKSKSSKVKSGVSISPYFKCPLSLELMVDPVIVASGQTYDRQSIQMWLDHGLTVCPKTHQRLSHTNLIPNYTVKAMIANWCEENNVKLPNNSRNSNSAHNSSPSDYLLHQDLDRMCSFGSVHSSNSNSKSSSQTGNTFEKQKGDSSFRLSDESSGCRSDEADKFQQQSPAPSSSYSRSESFSSSISSTDYVLPVAKVVSGRSSKHQNVELSGEITDGRSASPACKELGNFPSLPRQKFGSPRSEIGWMENENKCNKNNNIIITSHSKENSHPLSSLGSDEMTTTSHVNKLIEDLLSQSNETQTAAVEELRLLSKHNMGNRVIIGQCGAILHLLPLLYSDMKITQEHAVTALLNLSINEDNKALIMEAGAVEPLIHVLQTGNDSAKENSAAALFSLSVVSNNKEKIGRSGAVKALVDLLASGTHRGKKDAATALYNLSVFNENKARIVQAGAVKFLVLLLDPADGMVDKAVALLANLSTIAEGRLHIVREGGIPLLVEIVESGSQRGKENAACILLQLCLHSYKLCTLVLQEGAVPPLVALSQSGTPRAREKAQQLLSHFRNQREGARGKGKS* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1027 800 SUPERFAMILY RING/U-box 240 317 - -
Lja1g1027 800 SUPERFAMILY ARM repeat 509 787 IPR016024 -
Lja1g1027 800 Gene3D - 707 789 IPR011989 -
Lja1g1027 800 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Lja1g1027 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 597 IPR000225 GO:0005515
Lja1g1027 800 CDD RING-Ubox_PUB 246 288 IPR045210 -
Lja1g1027 800 SMART arm_5 544 584 IPR000225 GO:0005515
Lja1g1027 800 SMART arm_5 707 747 IPR000225 GO:0005515
Lja1g1027 800 SMART arm_5 585 625 IPR000225 GO:0005515
Lja1g1027 800 SMART arm_5 626 666 IPR000225 GO:0005515
Lja1g1027 800 SMART arm_5 749 789 IPR000225 GO:0005515
Lja1g1027 800 SMART arm_5 667 706 IPR000225 GO:0005515
Lja1g1027 800 Pfam Armadillo/beta-catenin-like repeat 628 665 IPR000225 GO:0005515
Lja1g1027 800 Pfam Armadillo/beta-catenin-like repeat 585 624 IPR000225 GO:0005515
Lja1g1027 800 Pfam Armadillo/beta-catenin-like repeat 546 583 IPR000225 GO:0005515
Lja1g1027 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 637 679 IPR000225 GO:0005515
Lja1g1027 800 Coils Coil 190 217 - -
Lja1g1027 800 MobiDBLite consensus disorder prediction 347 407 - -
Lja1g1027 800 PANTHER U BOX DOMAIN-CONTAINING 12 795 - -
Lja1g1027 800 MobiDBLite consensus disorder prediction 347 380 - -
Lja1g1027 800 MobiDBLite consensus disorder prediction 429 463 - -
Lja1g1027 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 719 IPR000225 GO:0005515
Lja1g1027 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Lja1g1027 800 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Lja1g1027 800 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 12 795 - -
Lja1g1027 800 Gene3D - 508 630 IPR011989 -
Lja1g1027 800 Gene3D - 631 706 IPR011989 -
Lja1g1027 800 MobiDBLite consensus disorder prediction 388 407 - -
Lja1g1027 800 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Lja1g1027 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 325 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1027 Lja-Chr1 10188743 10193773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1027 7 800 U-box Gene Family AT3G54790 52.065 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1027 - - gmx:100804684 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1027 1 10188743 10193773 Lja1g1027 1 10188743 10193773 ECH