Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1023 ATGGAAGCAGGCGGAAATCTTTCAGTTCCCCCTGGTTATGTATCCCTGACATCTTTTATTTTGAAAAGGGGCGAAAAGGTTAAGAAAATTGATGGAGCTGCAACCTTTCCAACTCCATCTGAACAAGAGCCAACTAAAGCTGATATGAATGACGTTGATGCATATAACCAAATTAATAGACATCGACCATGGATATTGTTGGACCAAAGCAACCACAAACCTGAGGAATCTCACACAGAACATCTTACTAAGGATCTCCCTTCGAATACTTGTCGACCAAAGGGGACTGTACGTGGATGTCCAAAATGCAGTAATTGTCTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCCAGAAGAGAAGTTCTGGAAGAAGCTCCTACTTTCCACCCAACAGAAGAGGAATTCACGGACACACTTAAATATATTGCAAGCATATGTTCGACAGCAGAGCCATATGGAATTTGTCGTATTGTCCCCCCTACTTCATGGAAACCACCGTGTTTCCTTGAGAAAAAACACACATGGGAAAACTCTGAATTTGTTCCTCAGATTCAGCGAATTGATGGGCACCTAATTCCGCATACCCCAGAACCCTCTGATCATAGTACAAAAACCAAGAGAAGAAAAGGTGTGGAAGTAGCCATGGACTCTCAGCTAAGTAATAGAAGCACTTGCACCACAAGTAACCTGAGTGTTGAATCTGACCATAATTCTGAACCTGCTCCTAAATTTACTCTCAAAACATTTAAGAAATTTGCCGATGAATTCAAGATCCAGTACTTCAATTACAAGGATGAGAATAAGATTAAAGGTTCTGATACAAGTTCAGCCATACATCAACACAAGTGGGAGCCATCTATTGAGAATATTGAGGGTGAATATGGACGGATTGGTCAAAATCCAACCGAAGAAATTGAGGTGCTCTGTAGTAACACTATGGAAGCTGGAAATTTTAGCAGTGGATTTCCATCAGCTTCTGATCTTCCGCAGGCATACACTTATCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATGCATTCCCTCTCTGGCTCTCTTCTTTCTTTAGAAAGCTCTGAAGCTTCACGTAACTTTGTCCCTCGGGTTCATGTCGGAATGTGCTTTTCTCCACTCAACTGGAAAGTGGAAGAACACCAATTATACTCATTATGTTACATGCATTTGGGTGAACCTAAAGTGTGGTATAGCGTCCCAGGAAGATTTTCTGTTAACTTTGAAACGCTTTGGAAGAAGTATCTTCCAGATAAGCATTCCGGACAGCCCCATAAGCATGATAATCTGGTTATGCAATTATCCTGCTCCATATTGAAAGCAGAGGGTATACCTGTATATCGTTGTGTACAGTATCCTCGAGAGTTTGTTCTTGTCTTCTCTGGAGCATATCATTCAGGATTTGACTGCGGTTTCAACTGTTCTGAAGCCGTAAGCTTTGCTCCTCTTGAGTGGCTGATTCATGGACAGAATGTTGTAGAGCTATATGGTGAACAGAGGAGAAAAACATTAATTTCATACGATAAACTCTTGCTCGGAGCAGCAAGGGAAGCTGTGAGGGCCCGATGGCAAACTGACCTGTGTAGGACGGGCACGCCAGACAACTTAACATGTAAAGATGCTTATCGAAGAAATGGGATATTAGCAAAAGCTTTAAATTGTCGCGTCAGGAGGGAAAGTTTGAAGAGGCAATTTCTCTGCACTTCTTTGCTATCACAAAGAATGGATAAGAACTTTGGTGCAACTTGTAAAAGGGAATGCAGTATCTGTCTGCGTGATTTACACTTATCTGCAGTAGGTTGTGCATGTTCGAATGACAAGTTTGCGTGTCTTGATCACGCAAAACAGCTTTGTTCTTGCACTTGGAGCAGCAGAATTCTCCTCTACCGTTATGATGTCAATGAATTGAATGTTCTCTGTCAAGCTGTGGATGGAAAATTAAGTGCAGTCTATAAATGGGCCAAAGAGGATCTTGGATTAACTGTTCACTCAATTGCCTCCAAGAGATCAAAACAAACCCCAGAAAATGTAAATGGTTCAACACAGCCTTCAGAAGGCTTGAGGAAAGAACCTACGCCCCCCACAGTACTGGATGCAAATTCAAAGTGGAAACAACTTAAATTGGATGAAATATCAAATAGATCAGAAAGGAAACAAAATGTAGGGGCCTCCCAAATCACTGGGACTTCTAATGGAACTTACATTAGTTCTTATGGCATTCATTCAAAAATGAATACACCTTTACTTCATTCAACAACATCCCATGAGATGAAAGCAGAAGAGGAAACAGCGGGGCACCAATCTGCTGCAACAAACATTAGCGAAGGAACTAGTTCTGCTGGAATCGAAACTGATATGAAGCCACTTGACCGCAAGTTTACAATGTCAAAGAAAGTAGGAGACCCAAAAGTATCTTCTACAGTTTCTTTAGGTTCAAACTCTCGTTACCTGTCTCTTCTTCGAGAACAAGGAAGCGTGGTTTTGGAACTTTCCTCTGATAGTTCTTCAGAATCCGATGACTCATAA 2544 0.4139 MEAGGNLSVPPGYVSLTSFILKRGEKVKKIDGAATFPTPSEQEPTKADMNDVDAYNQINRHRPWILLDQSNHKPEESHTEHLTKDLPSNTCRPKGTVRGCPKCSNCLKVTARWHPEDARREVLEEAPTFHPTEEEFTDTLKYIASICSTAEPYGICRIVPPTSWKPPCFLEKKHTWENSEFVPQIQRIDGHLIPHTPEPSDHSTKTKRRKGVEVAMDSQLSNRSTCTTSNLSVESDHNSEPAPKFTLKTFKKFADEFKIQYFNYKDENKIKGSDTSSAIHQHKWEPSIENIEGEYGRIGQNPTEEIEVLCSNTMEAGNFSSGFPSASDLPQAYTYPEYLKSGWNLNNMHSLSGSLLSLESSEASRNFVPRVHVGMCFSPLNWKVEEHQLYSLCYMHLGEPKVWYSVPGRFSVNFETLWKKYLPDKHSGQPHKHDNLVMQLSCSILKAEGIPVYRCVQYPREFVLVFSGAYHSGFDCGFNCSEAVSFAPLEWLIHGQNVVELYGEQRRKTLISYDKLLLGAAREAVRARWQTDLCRTGTPDNLTCKDAYRRNGILAKALNCRVRRESLKRQFLCTSLLSQRMDKNFGATCKRECSICLRDLHLSAVGCACSNDKFACLDHAKQLCSCTWSSRILLYRYDVNELNVLCQAVDGKLSAVYKWAKEDLGLTVHSIASKRSKQTPENVNGSTQPSEGLRKEPTPPTVLDANSKWKQLKLDEISNRSERKQNVGASQITGTSNGTYISSYGIHSKMNTPLLHSTTSHEMKAEEETAGHQSAATNISEGTSSAGIETDMKPLDRKFTMSKKVGDPKVSSTVSLGSNSRYLSLLREQGSVVLELSSDSSSESDDS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1023 847 MobiDBLite consensus disorder prediction 757 791 - -
Lja1g1023 847 ProSiteProfiles JmjN domain profile. 126 167 IPR003349 -
Lja1g1023 847 SUPERFAMILY Clavaminate synthase-like 238 529 - -
Lja1g1023 847 SMART cupin_9 337 503 IPR003347 -
Lja1g1023 847 MobiDBLite consensus disorder prediction 771 787 - -
Lja1g1023 847 Pfam C5HC2 zinc finger 593 643 IPR004198 -
Lja1g1023 847 SMART JmjN_1 125 166 IPR003349 -
Lja1g1023 847 Pfam jmjN domain 127 160 IPR003349 -
Lja1g1023 847 Pfam JmjC domain, hydroxylase 371 486 IPR003347 -
Lja1g1023 847 MobiDBLite consensus disorder prediction 675 707 - -
Lja1g1023 847 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 74 756 - -
Lja1g1023 847 MobiDBLite consensus disorder prediction 675 694 - -
Lja1g1023 847 ProSiteProfiles JmjC domain profile. 337 503 IPR003347 -
Lja1g1023 847 Gene3D Cupin 111 487 - -
Lja1g1023 847 PANTHER LYSINE-SPECIFIC DEMETHYLASE 74 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1023 Lja-Chr1 10165305 10171930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1023 8 832 JUMONJI Transcription Factor Family AT1G08620 42.335 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja1g1023 JmjC 4e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1023 - - gmx:100804864 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1023 1 10165305 10171930 Lja1g1023 1 10165305 10171930 ECH