Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1022 ATGGGGTTGAGAGACATTAGTGCTTCTCTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTGTGTCACTACCTTTACAAAAAGGTTACAAATGAACACGTTCTGAAGGGTACTTTGGTGGAAATTGACTTGCACATATGTGAACCATGGCAACTTCCTGAGGTGGCTAAGCTGAATGGGAATGAGTGGTACTTCTTTAGCTTCCGTGATCGGAAATATGCGACTGGGTTTAGAGCCAACAGGGCCACCGCATCTGGATATTGGAAAGCGACGGGGAAGGATCGGACGGTGATAGATTCAGTGACAAGGGAGGTTGTAGGGATGAGGAAGACACTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACTGGATGGATCATGCATGAGTTCCGACTTGAGGCCCCACACATGCCTCCTAAGGAGGACTGGGTCTTATGCAGAGTCTTCCACAAAAGCAAAGAAGATAACAGTTCCAAATTCAGCACACAACAACTCATGATGTATAATGAGACAACATCACCACCTCCACCCCTAACTTTGTCTTCATCATCTCCATTAATCAACCAAACAATGCCTGCCATTGGTGGGTATAACAGACTTCCCTCGTTCTCTTCCTCCACGCCAACCCTTCATAATCACTTCAACTTAAACACTTCTTCCCTCAACCTTCTTCCATTTTCACAAGAAACAAACAATAGCACTGTTACAACTCAACTCAGTTCCAAAGCTGATGATGGATATGGATTCTTATGGGACATGGATATGGAAGAAAATAATAGCTTTGAAGATGGCGTGGCTTCAAACTTGGACGCTATAAGATTCGAGGTTGATAACAATAACAATGTGGTCTTGATATAA 873 0.441 MGLRDISASLPPGFRFYPSDEELVCHYLYKKVTNEHVLKGTLVEIDLHICEPWQLPEVAKLNGNEWYFFSFRDRKYATGFRANRATASGYWKATGKDRTVIDSVTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLEAPHMPPKEDWVLCRVFHKSKEDNSSKFSTQQLMMYNETTSPPPPLTLSSSSPLINQTMPAIGGYNRLPSFSSSTPTLHNHFNLNTSSLNLLPFSQETNNSTVTTQLSSKADDGYGFLWDMDMEENNSFEDGVASNLDAIRFEVDNNNNVVLI* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1022 290 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Lja1g1022 290 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Lja1g1022 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 284 - -
Lja1g1022 290 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 284 - -
Lja1g1022 290 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lja1g1022 290 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1022 Lja-Chr1 10145366 10154173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1022 6 159 NAC Transcription Factor Family AT1G56010 59.259 1.14e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g1022 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1022 - - gmx:100806284 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1022 1 10145366 10154173 Lja1g1022 1 10145366 10154173 ECH
Lja1g1022 1 10145366 10154173 Lja5g2067 5 27384651 27390287 PCT