Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1018 ATGGATTCTGCGAGGAGTTGGTTCCAGAAGTTTCAGCCGCGTGATAAGCTGAGAGGTGGTTCTACAAGGAAGAAGGATGATTTCAACAATGGCGGCGACGAACCGAGTGGGCCGGTGGATGAAGCCGCTCTTTCCAATATCACCAAGCAGAAGGTGGCTGCAGCCAAGCAGTATATAGAGAATCACTACAAGGAGCAAATGAAGAGCCTTCAGGAGAGGAGGGAACGCCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGATCAAAATAACTTGCTTAAATTTTTAGAGAAAAAGGAAACCGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGTTGATGATTTCGAGTTATTGACTATGATCGGAAAAGGTGCATTTGGGGAGGTCCGGGTCTGCAGGGAAAAGGCCACAGATCATGTATTTGCAATGAAGAAGTTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTCAGAGCGGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATTTGTATCTTATTATGGAGTACCTACCTGGTGGGGACATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCCGATTTTATGTAGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTACTACTTGATAGATATGGACACTTGAGACTGTCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTTGAAGAAACTGATTTTTCTCAGAATGCCAATGGATCTACACAGAATGATGATCGTACTGGTCCAAAACGCACCCAACAAGAACAGTTGCAACACTGGCAGAAGAACAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATCATGTATGAAATGCTGGTGGGATATCCGCCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAAATCACACTTAAAGTTTCCTGAAGAAGTAAAGTTATCTCCGGAGGCCAAAGATCTTATAGTTAAGCTTTTGTGTAATGTCAACCAGAGGTTGGGGTCAAATGGTGCATATGAAATAAAGGCTCATCCATTCTTTGAAGGTGTTGAATGGGATAAATTGTATCACATGGATGCTGCATTTATTCCTGAGGTCAATGATGATTTAGATACTCAAAACTTTGAAAAGTTTGAAGAGTCCGACAGCCAGACTCAATCATCATCAAGAGCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACTTGAACTTTGTGGGATACACATACAAGAACTTTGAAATTGTTAACGACTACCAAGTTCCTGGAATGGCTGAATTGAAGAAAGCCTCCAAATCTAAGAAGAAGCCATCCATCAAGTCACTGTTTGAACCTTCATCATCATCTTCATATTCTTCTCTAGAAAACCCAAAAACAAACCAAAAAAATCATCAACCCCACCCCAAACATCAATTTCAGATCTCAAATCAGCCATCAATTGAAGATACACCCATCTTGCCCAATCAATTTGAAAGTCTGGACATTTTTTACTTCTCCCTCTAA 1713 0.4051 MDSARSWFQKFQPRDKLRGGSTRKKDDFNNGGDEPSGPVDEAALSNITKQKVAAAKQYIENHYKEQMKSLQERRERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKATDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEETDFSQNANGSTQNDDRTGPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEVKLSPEAKDLIVKLLCNVNQRLGSNGAYEIKAHPFFEGVEWDKLYHMDAAFIPEVNDDLDTQNFEKFEESDSQTQSSSRAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKASKSKKKPSIKSLFEPSSSSSYSSLENPKTNQKNHQPHPKHQFQISNQPSIEDTPILPNQFESLDIFYFSL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1018 570 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja1g1018 570 SUPERFAMILY Protein kinase-like (PK-like) 94 470 IPR011009 -
Lja1g1018 570 MobiDBLite consensus disorder prediction 508 553 - -
Lja1g1018 570 MobiDBLite consensus disorder prediction 9 31 - -
Lja1g1018 570 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 521 - -
Lja1g1018 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lja1g1018 570 MobiDBLite consensus disorder prediction 278 303 - -
Lja1g1018 570 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Lja1g1018 570 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja1g1018 570 CDD STKc_NDR_like 119 481 - -
Lja1g1018 570 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Lja1g1018 570 Gene3D Phosphorylase Kinase; domain 1 119 446 - -
Lja1g1018 570 SMART serkin_6 121 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1018 570 Pfam Protein kinase domain 122 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1018 570 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja1g1018 570 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 33 521 - -
Lja1g1018 570 MobiDBLite consensus disorder prediction 1 41 - -
Lja1g1018 570 ProSiteProfiles Protein kinase domain profile. 121 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1018 570 MobiDBLite consensus disorder prediction 510 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1018 Lja-Chr1 10107303 10116266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1018 1 513 AGC Kinase Gene Family AT2G20470 80.806 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja1g1018 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1018 K08790 - gmx:100783286 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1018 1 10107303 10116266 Lja1g1018 1 10107303 10116266 ECH
Lja1g1018 1 10107303 10116266 Lja6g0046 6 860691 880235 PCT
Lja5g2075 5 27574887 27587398 Lja1g1018 1 10107303 10116266 PCT