Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1017 ATGATGGATCATGTGATTGCTGGGAAGTTTAAATTGGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAACTTTATATTGCTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTCAAGTTGGAACCTGTGAAGACCAAGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCATCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATATCATGGCAATTGACCTTCTTGGACCAAGTCTAGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGTCAGTCTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTCTACGCCATTGACTTTGGCCTTGCAAAAAAGTATAGGGATCTTCAGACTCATAGGCACATCCCATACAGGGAAAACAAGAACCTTACTGGCACAGCTCGTTATGCAAGTGTCAATACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGAACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAGATGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCTTCAGAGTTTGTATCATATTTCCACTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGACTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGTTATCAATTTGACTATGTTTTTGACTGGACTGTTTTGAAGTATCCGCAGATTGGTGGCAGCTCCAGAGGACGGCATGACAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAGATTTCAGTTAGGAAAGAGATTCGAGAGAAGCTATCTGGTGCTGTTGAAGCATTCTCGCGGAGGAACCCAACAAGTTCTAGTCCTCGTCGTGATCATTCCAAGCATAGGAGTTTTGAGGATGTAGCTGTACACAAGGATCCGTATCATGATCAAGAGAAGGGACGCAGTTCCTCTCGATATGGCAGCAGCTCAAGAAGACCCGTAATCTCATCATCAACCAGGCCAAGTTCCTCAGCCGATCATACTGACAGTCGTACTGGCCGACTAACCTCAAGCGGTAGCCGCCCATCCGCAACACATAGAAATCAACCCTCGTATGAGGCCAAACAGCCAACTTTCGTGCGCTCTGGATCCACGCGAGGCAATCGTGATGATCCTCTGAGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1389 0.437 MMDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNIMAIDLLGPSLEDLFNYCNRKLTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGGSSRGRHDSGKAAMHAGPSVQKPEKISVRKEIREKLSGAVEAFSRRNPTSSSPRRDHSKHRSFEDVAVHKDPYHDQEKGRSSSRYGSSSRRPVISSSTRPSSSADHTDSRTGRLTSSGSRPSATHRNQPSYEAKQPTFVRSGSTRGNRDDPLRSFELLSIRK* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1017 462 MobiDBLite consensus disorder prediction 446 462 - -
Lja1g1017 462 MobiDBLite consensus disorder prediction 350 381 - -
Lja1g1017 462 MobiDBLite consensus disorder prediction 324 340 - -
Lja1g1017 462 CDD STKc_CK1_delta_epsilon 9 283 - -
Lja1g1017 462 PANTHER CASEIN KINASE-RELATED 2 450 - -
Lja1g1017 462 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1017 462 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lja1g1017 462 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1017 462 MobiDBLite consensus disorder prediction 382 444 - -
Lja1g1017 462 MobiDBLite consensus disorder prediction 302 462 - -
Lja1g1017 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lja1g1017 462 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1017 462 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Lja1g1017 462 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lja1g1017 462 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1017 Lja-Chr1 10096013 10103620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1017 9 224 EF-hand Containing Proteins AT2G17890 24.336 7.56e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja1g1017 Pkinase 9.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1017 K08960 - gmx:100781494 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1017 1 10096013 10103620 Lja1g1017 1 10096013 10103620 ECH
Lja1g1017 1 10096013 10103620 Lja5g2129 5 29052167 29061054 PCT