Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1010 ATGGGAAAGAACAACAAATTGAAGAAGGAGAATGGTGGGAGTGAACACTGCCCCCTAACTGTTTTTGTGTCCAACTTCCCATACTCCTTTTCCAACTCTCAGCTTGAAGAGACGTTCAGTGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCGCACAGAAGGGGTCTGACCAGCATCGCGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGATGCTAATCGTGCTATTGAGCTGAAAAATGGTTCAACTGTTGAAGGCCGAAAAATTGTGGTGAAGCATGCAATGCCTCGTCCTACCCGTGGAGAACGACAATCAAAACCTAATCAAGTGGGCAACATAGATGATCTAACAGATTCAAAAAAGGATGATAAAGACAGCAAATTATCTGGAGCAGAGAAGCCTGTTTCGGTTTTGAAGGAAGAAGACGTACAAGTTTCCAGTAAACAAAAAATCTCAAGGAATCCTTTGGAGAAGAAAAAGGCATCTCTTTGTAATGATGTAGCAGATGAGGGGGGTTGCTCAAAAACGCAGAGGGTTGCCAGAACTGTTGTCTTTGGTAGTCTCATAAATTCTGTTATGGCTGAAGATGTTCATCGACAAGCCAGAGAAATTGGCACTGTGTGTTCTATTAAATATCCCCTCTCAATGAAAGATCTTGAGCAACACGGTCTGCTGCAAGATGGCTGTATTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAAGCAGCCCGAGCTTCTGTTGCCAAATTACATAAAAGAGAGATAGGAGGGGGAACTGTTTGGGCTCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTTAAGGCCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAATTCAGACACAGGCCTCTCTAAGGGTTTTGCATTTGTAAAATTTACCTCCAAGCAAGATGCAGAGAATGCTATTCAAAAGCTCAATGGATCAAAGTTTGGCAAACGCCTTGTAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGAAATGGAACAAATGACACTCTTGCTCATGAGGAAGGACAAGAAAAGGTGAGAGATGAAGATAATAGTACTACTGAGGATGATGACGAGCCCATTGACAAACGGTCTACTCATGAAGATGATAGTGATGTAGATGACTCTAGTGCCATGAAGGAAGAAAGTGTTCCTTCTGAAGATAATTTTGATAAGGAAGCAGATATTGCAAGAAAGGTTCTTAATAACTTGATTACATCCTCCACCAAAGGAACAGCTGTAAACAATGGTTCTAAAGAAAAAAAGGAGCCAAAATCCAATGAAAATGTTAAGGATGCTGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCAGATGTTTCTAAGCCTGAAGTTTCCACCCGAACTAAGTTACCAAATCCAAAGGTAACTGAAGATGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGAGAATGAAGAAGTGAAGCAACGGTTTTCTGCCTTTGGGGAAGTAGAATACTTTGTTCCTGTTCTCCACCAAGTTACCAAACGACCAAGAGGGACTGGTTTTCTTAAGTTTAAAACCGTCGAAGCAGCTAATAGTGCAATTTCAACTGCGAGTGCTGCGTCTGGACTGGGTATTTTATTGAAGGGGAGACCATTAAAAGTTTTGAAGACTTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAGAAAAAGAGGTTCATGACCACCGTAATCTTTACTTGGCACAGGAAGGACTTATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGAAAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTATTATCTACAACTTGCCGAAGTCGATGAATGAAAAAGAACTAAAGAAGCTTTGCATGGATGCAGTCATCGTTGGAGCTGAAAAGCAAAAACCTTTAATTCGGCAGATAAAGTTTTTGAAAGATGAAAAGAAAAGGGCTACTCAAGAACGCTATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAGCATGCCGTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAAATTTTTGGTCCTGAGCATCGACCAATCGTGGAATTTGCTCTTGATAATGTTCAAACACTGAAACTTCGGAAGGGAAAGCTACAATCTCAGGAGCCAGCTCGTCATCATCACAACGATGGCAAGGAAAATGAGAAACCCAGTGCAACAGAAGTTCATACACAAGTGAGGGACAGAAAACGAAAATCTCAAGAGAATGACAAACCAGAAAAAGACTCAGTGGTGAAAACTGATGGTGAATTAAGTGGGAAAGTGGCAAATGGAAAATCCTCTCAAGGACGCAAATCCAAAAGACAGAAAGACAACCATAAGAATAAAAATGCCGAAGTGTCATCGCCGAAAGAAAAGCCAGAAGCCTTGCCCATGGAGTCAAAGAATAACCAAGATGATCAAACAAAATCAGGAAACAAGGGTGATGTTGGATTTAGAAAGAGGAAGGTGCAAAACCAAGAAGAACAAGAAGCAGGGCAAAAGGTTTCTAGGAAACGGGCAAAGAAGAAGAAAGATTCAGGGGAGGAGGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGAAACAAGTTCTCACAAAAATCCCCAGGGAATGGTGGTGAGAAAAAGCCTACTAAGCCGCTTAGAAAATGGTTCCAAATATAG 2832 0.4082 MGKNNKLKKENGGSEHCPLTVFVSNFPYSFSNSQLEETFSEVGPVRRCFMVAQKGSDQHRGFGYVQFAVEEDANRAIELKNGSTVEGRKIVVKHAMPRPTRGERQSKPNQVGNIDDLTDSKKDDKDSKLSGAEKPVSVLKEEDVQVSSKQKISRNPLEKKKASLCNDVADEGGCSKTQRVARTVVFGSLINSVMAEDVHRQAREIGTVCSIKYPLSMKDLEQHGLLQDGCILDASAVLYTSVKAARASVAKLHKREIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEIRDMFSSAGYVWDVFIPHNSDTGLSKGFAFVKFTSKQDAENAIQKLNGSKFGKRLVAVDWAVPKKIFRNGTNDTLAHEEGQEKVRDEDNSTTEDDDEPIDKRSTHEDDSDVDDSSAMKEESVPSEDNFDKEADIARKVLNNLITSSTKGTAVNNGSKEKKEPKSNENVKDADSKASNESEKVSDVSKPEVSTRTKLPNPKVTEDDLQRTVFISNLPFECENEEVKQRFSAFGEVEYFVPVLHQVTKRPRGTGFLKFKTVEAANSAISTASAASGLGILLKGRPLKVLKTLDKKSAHDKELEKAEKEVHDHRNLYLAQEGLILEGTPAAEGVSASDMLKRKELERKKKTKLQSPNFHVSKTRLIIYNLPKSMNEKELKKLCMDAVIVGAEKQKPLIRQIKFLKDEKKRATQERYSRGVAFVEFSEHQHAVVALRVLNNNPEIFGPEHRPIVEFALDNVQTLKLRKGKLQSQEPARHHHNDGKENEKPSATEVHTQVRDRKRKSQENDKPEKDSVVKTDGELSGKVANGKSSQGRKSKRQKDNHKNKNAEVSSPKEKPEALPMESKNNQDDQTKSGNKGDVGFRKRKVQNQEEQEAGQKVSRKRAKKKKDSGEEVVDKLDMLIEQYRNKFSQKSPGNGGEKKPTKPLRKWFQI* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1010 943 CDD RRM3_RBM28_like 500 579 - -
Lja1g1010 943 Gene3D - 264 390 IPR012677 -
Lja1g1010 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Lja1g1010 943 MobiDBLite consensus disorder prediction 364 423 - -
Lja1g1010 943 PANTHER RNA-BINDING PROTEIN 28 15 847 - -
Lja1g1010 943 CDD RRM4_RBM28_like 652 748 - -
Lja1g1010 943 MobiDBLite consensus disorder prediction 387 423 - -
Lja1g1010 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 583 IPR000504 GO:0003723
Lja1g1010 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 741 IPR000504 GO:0003723
Lja1g1010 943 SUPERFAMILY RNA-binding domain, RBD 273 360 IPR035979 GO:0003676
Lja1g1010 943 MobiDBLite consensus disorder prediction 364 380 - -
Lja1g1010 943 MobiDBLite consensus disorder prediction 88 140 - -
Lja1g1010 943 SMART rrm2_1 501 579 IPR003954 GO:0003676
Lja1g1010 943 SMART rrm2_1 20 93 IPR003954 GO:0003676
Lja1g1010 943 SMART rrm2_1 278 351 IPR003954 GO:0003676
Lja1g1010 943 SMART rrm1_1 653 743 IPR000504 GO:0003723
Lja1g1010 943 SMART rrm1_1 278 351 IPR000504 GO:0003723
Lja1g1010 943 SMART rrm1_1 20 93 IPR000504 GO:0003723
Lja1g1010 943 SMART rrm1_1 501 579 IPR000504 GO:0003723
Lja1g1010 943 MobiDBLite consensus disorder prediction 759 809 - -
Lja1g1010 943 CDD RRM1_RBM28_like 20 98 - -
Lja1g1010 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Lja1g1010 943 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 847 - -
Lja1g1010 943 MobiDBLite consensus disorder prediction 861 890 - -
Lja1g1010 943 MobiDBLite consensus disorder prediction 897 914 - -
Lja1g1010 943 SUPERFAMILY RNA-binding domain, RBD 20 263 IPR035979 GO:0003676
Lja1g1010 943 MobiDBLite consensus disorder prediction 446 480 - -
Lja1g1010 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Lja1g1010 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 560 IPR000504 GO:0003723
Lja1g1010 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 346 IPR000504 GO:0003723
Lja1g1010 943 SUPERFAMILY RNA-binding domain, RBD 500 729 IPR035979 GO:0003676
Lja1g1010 943 MobiDBLite consensus disorder prediction 116 140 - -
Lja1g1010 943 Gene3D - 651 745 IPR012677 -
Lja1g1010 943 Gene3D - 10 128 IPR012677 -
Lja1g1010 943 MobiDBLite consensus disorder prediction 757 943 - -
Lja1g1010 943 MobiDBLite consensus disorder prediction 439 492 - -
Lja1g1010 943 Gene3D - 490 591 IPR012677 -
Lja1g1010 943 MobiDBLite consensus disorder prediction 833 854 - -
Lja1g1010 943 CDD RRM2_RBM28_like 278 354 - -
Lja1g1010 943 Coils Coil 578 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1010 Lja-Chr1 10049318 10060805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1010 281 356 Eukaryotic Initiation Factors Gene Family AT3G11400 38.158 7.02e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1010 K14573 - gmx:100794821 1313.13