Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1008 ATGGGGAGTAGGAGATTGGAGAAGATGATCAAGTGTTTCTGCTCCGGGGAGCAGGTAAGAAGAGAGGCGGATGAATTGGTTCCTTATTCGGAATCTCTGGCGACCAAGGATTACTTTTCGTCGACTGCGAGCGGCGTTTCTGGCCAAGATGGAAGAGTTGAGAGGAGGCCGGATTCCGGTAATATAGAAGAAGCCGAATCCTCGTTACGCGAGAGCGGCAACTTGAACTATGAGGAAGCTAGAGCTTTATTAGGAAGATATGAATTTCAGGAAGGAAATATAGAAGCCGCTTTACATGTTTTTGAAGGAATAGCCATTGTTCCTTTGGCTCCCAAGATAAAAGATTTCTTTGTCAAAAGCCAAGATCTTGCCAAACGCAAAGGACGCTGTAGGAGACGCTCTCAGAATTATGATACTCTGCCAATGGCTATACATACGGCTGGATTACTGTTAGAAGCAGTTTTCTTAAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAAACATGCAAAGTTATTCTGGACATAATTGAGTCTTCATTACCTTATGGCTTGCCAGAAAACTTTGGTGCAGAATGTAAATTGCAGGAAACTTTGAGTAAGGCAGTAGAGCTGCTTCCAGAATTATGGAAACTTGCTCACTGTACCGGTGAAGTTATTTTGTCTTACCGGCGTGCACTCCTTCATAAATGGAATCTTGATGCAGAGACTGTAGCAAAAATTCAGAAAGAATTTGCTGTTTTTCTTCTATATAGTGGAGGGGAAGAAATTCCCACAGATCTTCGTTCCCATATGGACAATTCTTTTGTACCCAGAAGCAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGCTTAGAAGAGTTTCTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCATTAGCCAATCAATGGGAAGAATTACTTCCTGGTACCGTTGATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTAAGGACATGGTAGCACTGAATCTTCTGAGAAGATTATTGAATAGCAGAGAGAATCCAAGTCATGTTCCTGCTTTGTTAATGGCTTCTAAGATATGTAGTGAGAACCCTGATTTTGCAAAAGATGGGGAAAGCTTTTCTCGCAGAGCGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAAATCTTGCCAAATGCTTACTTGGTGTTTCACTTTCAACATACTCAAGATTTACTGTCTCTGATTCTGAGAGGTCTGAGAGACAATATGAGGCACTTCATTCCTTGGAAACTGCAAGCAGAATGACCAGAACTAGTGACCCTCTTATACTATACTATTTAAGTTTAGAATATGCGGACCAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAACGCTTTCTAAACTTGGAAGCTGGGTCTAATATTAAAGGTTGGTTATTGTTGGCCAGGATATTATCAGCTCAAAAACAGTTTCTGGATGCTGAGTCTGTTGTTGATGCTGCTTTGGACCAGATTGGAATATGGGATCAAGGAGATTTATTGCGAACAAAAGCTAAACTGAAAATTGCACAGGGCCAGTTAACAAGTGCCATTGAAACATATATTCAGCTTCTTTCTATTCTCCTAGTTCAGAGAAAAACTTCTGGCTCAATACAGAAGCTATATAAGGACTACAGAGATTATGCTAGGAACTTGGAAGAGGAAATATGGCATGATCTTGCATATGCATACATAAGTCTGTCACAGTGGCACGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCTTCAGACAATACACCGCTTCTAGATGTCATGTAATAGGTACAATGCACGAAGCAAAGGGCCTATACAAAGAGGCTGTAAAAGCTTTTCGCGATGCTTTGAACATTGATCCCAGACATGTACCCAGCTTGATATCCACTGCTGTGGCTCTTAGACGGTGGAGTAATCAATCAGATCCTGTTGTCAGAAGCTTTCTGATGGATGCACTACGTTATGACAGATTGAATGCTTCTGCTTGGTATAATCTCGGCATTCTTCACAAGGCTGAAGGTAGAGTGCTAGAAGCTGTAGAATGTTTTCAGGCAGCAAATTCTCTTGAAGAAACAGCACCAATTGAACCTTTCAGATGA 2187 0.4124 MGSRRLEKMIKCFCSGEQVRREADELVPYSESLATKDYFSSTASGVSGQDGRVERRPDSGNIEEAESSLRESGNLNYEEARALLGRYEFQEGNIEAALHVFEGIAIVPLAPKIKDFFVKSQDLAKRKGRCRRRSQNYDTLPMAIHTAGLLLEAVFLKAKCLQVLGRFKEAAQTCKVILDIIESSLPYGLPENFGAECKLQETLSKAVELLPELWKLAHCTGEVILSYRRALLHKWNLDAETVAKIQKEFAVFLLYSGGEEIPTDLRSHMDNSFVPRSNIEEAILLLMILLRRVSLNKIEWDPSILDHLSFALSVSGDLTALANQWEELLPGTVDRRERYHALALCYYGAGKDMVALNLLRRLLNSRENPSHVPALLMASKICSENPDFAKDGESFSRRALENLDGRCDQLENLAKCLLGVSLSTYSRFTVSDSERSERQYEALHSLETASRMTRTSDPLILYYLSLEYADQRKLDAALHYAKRFLNLEAGSNIKGWLLLARILSAQKQFLDAESVVDAALDQIGIWDQGDLLRTKAKLKIAQGQLTSAIETYIQLLSILLVQRKTSGSIQKLYKDYRDYARNLEEEIWHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPFR* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1008 728 Gene3D Tetratricopeptide repeat domain 143 560 IPR011990 GO:0005515
Lja1g1008 728 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Lja1g1008 728 MobiDBLite consensus disorder prediction 41 70 - -
Lja1g1008 728 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 4 728 - -
Lja1g1008 728 SUPERFAMILY TPR-like 336 558 IPR011990 GO:0005515
Lja1g1008 728 Gene3D Tetratricopeptide repeat domain 564 726 IPR011990 GO:0005515
Lja1g1008 728 MobiDBLite consensus disorder prediction 51 65 - -
Lja1g1008 728 ProSiteProfiles TPR repeat profile. 689 722 IPR019734 GO:0005515
Lja1g1008 728 PANTHER PROTEIN NPG1 4 728 IPR043376 -
Lja1g1008 728 SMART tpr_5 619 652 IPR019734 GO:0005515
Lja1g1008 728 SMART tpr_5 151 184 IPR019734 GO:0005515
Lja1g1008 728 SMART tpr_5 493 526 IPR019734 GO:0005515
Lja1g1008 728 SMART tpr_5 458 491 IPR019734 GO:0005515
Lja1g1008 728 SMART tpr_5 689 722 IPR019734 GO:0005515
Lja1g1008 728 SMART tpr_5 585 618 IPR019734 GO:0005515
Lja1g1008 728 Pfam Tetratricopeptide repeat 689 720 IPR019734 GO:0005515
Lja1g1008 728 Pfam Tetratricopeptide repeat 620 652 IPR019734 GO:0005515
Lja1g1008 728 SUPERFAMILY TPR-like 531 719 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1008 Lja-Chr1 10016733 10022582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1008 10 728 Calmodulin-binding Proteins AT4G28600 54.856 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1008 K21843 - gmx:100784353 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1008 1 10016733 10022582 Lja1g1008 1 10016733 10022582 ECH
Lja5g2122 5 28957133 28963083 Lja1g1008 1 10016733 10022582 PCT