Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1004 ATGGAAGATTCTGGAAAACCGAACAACAAGAGCAAACTCATGAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGTTTGAGCTTGTTCGAGAAGCCAGTGTTGCTACCGTGTGACCACTTGTTCTGCGATTCCTGCTTGGTTGATAGCTCCCTTTCTGGCTCTGAATGTGCTGTTTGCAAAACTAAGTATGCTCAAACAGATATAAGAAATGTGCCGTTTGTGGAAAATATGGTAGCGATCTATAGAAGCTTGGATGCATCTTTTTGTGCTAGTATGTTGCAGCAACGCTCTAATGATGATTCTAGGGTTTTGCAGCAATGCCAGACATTTCGCGATTCAAGCTATAGTAATATTAAGAAGGCTGATAATTTTTCACAAAGTTCACCCAATTCTAATGGGTTTGGGGTTGGTGAGAATCGCAAATCTATGATTACAATGCATGTTAAACCAGAGGAGCTTGAGATGTCTAGTGGGGGAAGAGCTGGCTTTCGTAATGATGTAAAGCCTTATCCAATGCAACGCTCCCGGGTTGAAATTGGGGACTATGTGGAAATGGATGTGAATCAAGTGACACAAGCTGCAGTCTACAGCCCTCCATTTTGTGATACCAAAGGTTCGGATAATGACTGCAGCGAACTAGACAGTGATCATCCATTCAATCCTGAGATATTGGAAAATTCTTCATTGAAGAGAGCAAGCACAGGAAAAGGAAATTTGAAAGAAAGAAAGTCTCAGTTCAGGTCTGAAAGTTCGGCATCTGAAACTGATAAACCTACAAGAGATCTCAAGAGAAAAAAATATCTTACCAAAGGAGATGATCATATTCAACATGTCTCCACACATCATAGTAAGCTTGTGGATTCCCACTGTGGTCTGGACCTTAAATCTGGAAAGGAGCCGGGTGAGCTGTTGCCTGCAAACATACCAATTGATTTGAATCCAAGTACAAGTATCTGTTCGTTTTGCCAATCCTCCGAAACTTCAGAGGCTACTGGACCCATGCTTCATTATGCAAATGGAAAGTCAGTTATAGGAGATGCTGCAATGCAACCGAATGTCATACACGTGCATAGATGCTGTGTTGACTGGGCACCACAAGTGTATTTTGTTGATGAAACTTGTAAGAACTTGAAGGCAGAAGTGGCAAGGGGAGCAAAGCTGAAATGCAGCACATGTGGTCTAAAAGGAGCTGCTCTTGGCTGCTATGTCAAATCATGTAAAAGAACTTATCATGTTCCTTGTGCAATGGATGTTTCAACTTGCCGCTGGGATCAAGAGAAGTATCTCTTGCTCTGTCCTGTTCACTCTAATGCCAAATTTCCACATGAGAAATCCAGGCCTAAAAAACAGGCAACACAGGAGCATCCTGCTTCAGCTCATTTATCATCTCAGCTTTCAAACCCGCTTGGAGCTTTTCATGATGATGGTAAAAAAGTGGTTTTTTGTGGCTCTGCTCTATCAGATGAAGAAAAGGTGCTACTGATCAATTTCGCAAGCAAGGTTGGTGCTACAGTGACTAAGTTCTGGACCTCAGATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCATGCTCTAGGACGCTGAAAGTCCTCATGGCAATTCTAAATGGACGATGGGTTCTGAAAATTGATTGGATCAAAGCATGCATGAAAGTGATGAGTCTTGTCGAAGAAGAACCATATGAAATTAGTCTTGACAACCAAGGGTGTAATGGTGGCCCAAAAGCTGGCAGACTTAGTGCTCTGGCCAATGAGCCAAAGCTATTTAGTGGCTTAAAGTTTTACTTCTCTGGTGATTATGTGTCGAGTTATAAGGAAGATCTTGAAGATTTAGTTGAAGTGGGAGGAGGTGCGGTTTTGACAAGCAAGGATAAATTAGAAGCTAAAAGACATGAATTTGAAGTGACTTCAAATTTGCTGATTGTTTACAATCTTGATCCGCCACAAGGAAGTAAATTGGGGGATGAAGTTTCAACTCTTTGGCAGAGACTAAATGAGGCTGAAGATCTAGCTGCCAATACTGGTTCCCAAGTCATTGGACACACATGGATTCTGGAGTCAATTGCTGCGTGTAAGTTGCAGCCTTTTATTTGCTAA 2127 0.4227 MEDSGKPNNKSKLMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEIGDYVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFNPEILENSSLKRASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQPFIC* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1004 708 ProSiteProfiles Extended PHD (ePHD) domain profile. 324 444 IPR034732 -
Lja1g1004 708 SUPERFAMILY BRCT domain 486 574 IPR036420 -
Lja1g1004 708 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 706 IPR031099 GO:0006281|GO:0006974
Lja1g1004 708 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 11 706 - -
Lja1g1004 708 Gene3D BRCT domain 594 708 IPR036420 -
Lja1g1004 708 SUPERFAMILY BRCT domain 598 705 IPR036420 -
Lja1g1004 708 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lja1g1004 708 MobiDBLite consensus disorder prediction 243 272 - -
Lja1g1004 708 Gene3D BRCT domain 484 590 IPR036420 -
Lja1g1004 708 CDD BRCT_Bard1_rpt1 487 566 - -
Lja1g1004 708 SMART BRCT_7 477 563 IPR001357 -
Lja1g1004 708 SMART BRCT_7 596 701 IPR001357 -
Lja1g1004 708 CDD RING-HC 30 67 - -
Lja1g1004 708 Pfam PHD-like zinc-binding domain 365 444 - -
Lja1g1004 708 Pfam BRCA1 C Terminus (BRCT) domain 484 560 IPR001357 -
Lja1g1004 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 446 IPR013083 -
Lja1g1004 708 Pfam BRCT domain, a BRCA1 C-terminus domain 596 705 IPR001357 -
Lja1g1004 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 99 IPR013083 -
Lja1g1004 708 SUPERFAMILY RING/U-box 27 90 - -
Lja1g1004 708 ProSiteProfiles BRCT domain profile. 594 698 IPR001357 -
Lja1g1004 708 ProSiteProfiles BRCT domain profile. 483 573 IPR001357 -
Lja1g1004 708 Pfam Zinc finger, C3HC4 type (RING finger) 30 67 IPR018957 GO:0046872
Lja1g1004 708 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Lja1g1004 708 MobiDBLite consensus disorder prediction 215 272 - -
Lja1g1004 708 SMART ring_2 30 67 IPR001841 -
Lja1g1004 708 SMART ring_2 397 443 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1004 Lja-Chr1 9976219 9981763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1004 517 632 Core DNA Replication Machinery Family AT4G02110 28.099 2.03e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1004 K10683 - gmx:100784883 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1004 1 9976219 9981763 Lja1g1004 1 9976219 9981763 ECH