Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0999 ATGAAAATAACTTCTCAGATTGCAATTTTCTCTCTAGTTTTGGGCTGTATGCTTGTAGCTATTTCAGCTCAGAAAGAAGCAGAATCTCTGATTACATGGATGAACAGTTTGAACTCTCCCTTACCTTCTTCATGGAAACTTGCAGGCAACAACACTAGTCCATGCAAATGGACAAGCATATCATGTGATAAAGCAGGCACTGTTGTTGAGATAAAGCTTCCAAATGCAGGCCTTGATGGAACACTCAACAGGTTTGACTTCTCTGCCTTTCCAAATCTCAGTAATTTCAATGTCAGTATGAATAACCTGGTTGGAGAGATACCAAGTGGAATTGGAAATGCAACAAAGCTGAAAACACTTGATTTGGGTAGCAACAATTTAACCAATCCAATCCCACCACAAATAGGAAACCTTTTAGAGCTGCAAGTTCTTATATTTTCAAACAATTCACTCTTGAAACAAATACCAAGTCAACTTAGCAATCTGCAGAACCTTTGGCTTCTTGATTTAGGGGCAAATTATTTGGAGAATCCTGACCCAGATCAATTCAAGGGCATGAAATCCATGACAGAATTGAATCTTTCCTACAACTCTCTCACAGATGTTCCCCCTTTTGTTTCTAAATGTCCAAAGCTGGTTTCTCTTGATCTATCACTCAACACCATCACTGGGAAGATTCCTATACATTTGCTGACCAATCTTAAGAACCTGACAATCTTAGACCTTACAGAAAACAGGTTTGAGGGGCCAATTCCTGAAGAAATCAAGAATCTTTCAAACCTCAAACAGCTAAAACTTGGAATAAACAATCTGAATGGTACTATACCAGATGAGATTGGTCATTTGTCACACCTTGAGGTACTTGAGTTGCACCAAAATGACTTCCAAGGTCCAATACCATCATCAATTGGAAACCTCACTATGCTTCAGAGATTGCATCTTCGATTGTCAGGCCTAAACTCCAGCATCCCAGCTGGGATAGGTTTCTGCACCAACCTTTATTTTGTTGACATGGCAGGAAATAGCTTGACAGGTTCCTTGCCTCTTTCTATGGCTTCATTAACAAGGATGAGAGAGTTGGGACTCTCTTCTAACCAGTTATCTGGAGAGCTTTATCCATCTCTTCTTTCAAGTTGGCCTGAACTCATATCATTGCAACTCCAGGTCAATGACATGACAGGAAAACTTCCCCCTCAGATTGGTTCATTTCATAATCTAACTCATCTATACCTTTATGAAAATCAGTTTTCTGGACCAATACCTAAGGAGATTGGAAACTTATCAAGCATCAATGATCTTCAACTTTCCAACAACCACTTCAATGGTTCCATCCCATCAACCATTGGACAGTTAAAGAAGCTCATCACATTAGCCCTGGACTCAAACCAACTAAGCGGAGCCCTTCCTCCTGAAATAGGTGATTTGGAAAACTTAGAAGAGCTGAAATTAAGTGAAAACCATCTTTCAGGACCTTTGCCTTCATCAATAACTCATTTGGAAAACATCAAAATCCTGCATCTTCATTGGAACAATTTCTCAGGAAGTATTCCTGAAGATTTTGGGCCAAACTTTCTAACAAATGTGAGCTTTGCCAACAATAGTTTCTCTGGAAATCTCCCCTCAGGAATATGTAGGGGAGGGAATCTTATATACTTGGCAGCCAATTTGAATAATTTCTTTGGTCCAATCCCAGAAAGCCTGAGAAACTGCACTGGACTCATTAGAGTCCTGCTTGGAAACAATCTTCTAAGTGGTGACATTACCAATGCATTTGGTACATACCCTGATCTGAATTTCATTGATTTAGGACATAATCAGCTCTCTGGTTCTTTATCAAGTAACTGGGGAGAGTGCAAATTTCTCTCAAGTTTCAGCATATCTTCCAATAAGGTACATGGTAATATTCCTCCAGAGCTTGGAAAGTTGAGGTTGCAAAACCTTGACCTATCTGAAAACAATCTCACAGGAAATATCCCAGTAGAGCTTTTCAACTCATCTTCCAAGATGCTCAAACTAAATTTGAGCAACAACTATCTCTCAGGTCATATGCCAACAAGGATAGGAGAACTTTCAGAGTTGCAGTATTTGGATTTTTCAGCAAATAATCTAAGTGGGCCAATTCCAAATGCACTTGGAAACTGTGGAAACCTTATATTCTTGAAACTGAGTATGAACAATTTAGAAGGGCCTATGCCACATGAGCTTGGGAATCTGGTTAACTTGCAGCCTCTCTTAGATCTCAGTCATAACTCACTAAGTGGCGCGATAATTCCGCAACTGGAAAAGTTGACATCCCTTGAGGTTCTGAATCTTTCTCATAACCAACTTTCTGGGGGAATACCTTCTGATCTCAATGGACTTATCAGCCTTCAGTCAATTGATATATCCTACAACAAACTTGAAGGTCCCCTCCCAAGCCTAGAAGCTTTCCATAATGCTTCAGAAGAAGCACTGGTGGGTAATTCTGGTCTGTGTTCAGGTCCTGATAATGGCAATGCAAATCTGAGCCCGTGTGGTGGAGAAAAGAGCAACAAAGACAATAATCACAAGCTGATAATTGCTATAGTCATTCCTGTTGCTGCTTTAATCATTCTATTGGTTTCTCTTGGACTCTTCTTCATCTTTCGGCGTTATCGCAAAGCTGGTAAAGCTAAAAAGGACAAAGGTTCAAACAGAAAGAACTCATTCTTCATATGGAATCACAGAAACAGAATAGAGTTTGAGGATATATGCACTGCAACTGAGAATTTCAGTGAGAAATATTCAATAGGGACAGGAGGACAGGGAAGTGTTTACAAGGCAGTGCTTCCTACAGGCGACATCTTCGCGGTGAAACGTCTTCACCAAAATGAGGAAATGGAGGACTTCCCTGGATACCAGGCAAAGAATTTCACATCTGAAATCCATGCATTGACTAATATTCGCCATAGGAATGTTATCAAAATATATGGTTTCAGTTACTTGAATGGGTCCATGTTTTTCATATATGAACATGTGGAAAAAGGGTCCTTAGAGAGGGTGCTGCAGAAGGAACAGGAGGCAAAGATATTGACATGGGACATAAGGTTAAACATGATAAAAGGGTTGGCAAATGCATTGTCTTACATTCACCATGACTGCACTCCAAGCATTGTTCACAGAGACATTTCAGGAAACAATGTTCTATTAGACTCTGAATATGAGCCTAAACTCTCTGACTTTGGGACAGCAAGGTTGCTAAAAGCTGGAGCAAACTGGACAACCCCAGTTGGATCATATGGCTACATGGCACCAGAGCTTGCATTAACAATGAAGGTGACAGAAAAATGTGATGTTTACAGCTTTGGAGTTGTTGCATTACAAATTCTGGTAGGGAAGTACCCTCATGAGGTCCTTCTATGTTTAGAATCTAGGGAATTGGATCAGCACTTCATAGATTTCTTAGATAAGAGGCCAACACCACCAGAAGGCCCTGCCATCCAACTACTAGTAATGGTTGCAACCCTGATCCTCAAATGTGTTGCTAAAGATCCTTTGTCTCGACCCACAATGCGTCAAGTGTCCCAAGAGCTTCTATCATCTGATTTTTGGTCCCTCTCTGTCCCTTTCAACATGATCACATTGCAGAATCTACTTGACAATTTCGCATGTAGATAA 3636 0.4035 MKITSQIAIFSLVLGCMLVAISAQKEAESLITWMNSLNSPLPSSWKLAGNNTSPCKWTSISCDKAGTVVEIKLPNAGLDGTLNRFDFSAFPNLSNFNVSMNNLVGEIPSGIGNATKLKTLDLGSNNLTNPIPPQIGNLLELQVLIFSNNSLLKQIPSQLSNLQNLWLLDLGANYLENPDPDQFKGMKSMTELNLSYNSLTDVPPFVSKCPKLVSLDLSLNTITGKIPIHLLTNLKNLTILDLTENRFEGPIPEEIKNLSNLKQLKLGINNLNGTIPDEIGHLSHLEVLELHQNDFQGPIPSSIGNLTMLQRLHLRLSGLNSSIPAGIGFCTNLYFVDMAGNSLTGSLPLSMASLTRMRELGLSSNQLSGELYPSLLSSWPELISLQLQVNDMTGKLPPQIGSFHNLTHLYLYENQFSGPIPKEIGNLSSINDLQLSNNHFNGSIPSTIGQLKKLITLALDSNQLSGALPPEIGDLENLEELKLSENHLSGPLPSSITHLENIKILHLHWNNFSGSIPEDFGPNFLTNVSFANNSFSGNLPSGICRGGNLIYLAANLNNFFGPIPESLRNCTGLIRVLLGNNLLSGDITNAFGTYPDLNFIDLGHNQLSGSLSSNWGECKFLSSFSISSNKVHGNIPPELGKLRLQNLDLSENNLTGNIPVELFNSSSKMLKLNLSNNYLSGHMPTRIGELSELQYLDFSANNLSGPIPNALGNCGNLIFLKLSMNNLEGPMPHELGNLVNLQPLLDLSHNSLSGAIIPQLEKLTSLEVLNLSHNQLSGGIPSDLNGLISLQSIDISYNKLEGPLPSLEAFHNASEEALVGNSGLCSGPDNGNANLSPCGGEKSNKDNNHKLIIAIVIPVAALIILLVSLGLFFIFRRYRKAGKAKKDKGSNRKNSFFIWNHRNRIEFEDICTATENFSEKYSIGTGGQGSVYKAVLPTGDIFAVKRLHQNEEMEDFPGYQAKNFTSEIHALTNIRHRNVIKIYGFSYLNGSMFFIYEHVEKGSLERVLQKEQEAKILTWDIRLNMIKGLANALSYIHHDCTPSIVHRDISGNNVLLDSEYEPKLSDFGTARLLKAGANWTTPVGSYGYMAPELALTMKVTEKCDVYSFGVVALQILVGKYPHEVLLCLESRELDQHFIDFLDKRPTPPEGPAIQLLVMVATLILKCVAKDPLSRPTMRQVSQELLSSDFWSLSVPFNMITLQNLLDNFACR* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0999 1211 ProSiteProfiles Protein kinase domain profile. 917 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0999 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 261 1207 - -
Lja1g0999 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 173 - -
Lja1g0999 1211 Pfam Protein kinase domain 918 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0999 1211 Pfam Leucine Rich repeats (2 copies) 764 802 IPR025875 -
Lja1g0999 1211 SMART LRR_typ_2 354 378 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 451 474 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 258 282 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 499 522 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 138 161 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 234 257 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 690 714 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 306 330 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 763 787 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 403 427 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 475 498 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 186 209 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 162 185 IPR003591 -
Lja1g0999 1211 SMART LRR_typ_2 639 665 IPR003591 -
Lja1g0999 1211 SUPERFAMILY RNI-like 71 393 - -
Lja1g0999 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 187 260 - -
Lja1g0999 1211 SUPERFAMILY Protein kinase-like (PK-like) 893 1184 IPR011009 -
Lja1g0999 1211 SMART LRR_sd22_2 690 705 - -
Lja1g0999 1211 SMART LRR_sd22_2 114 140 - -
Lja1g0999 1211 SMART LRR_sd22_2 159 180 - -
Lja1g0999 1211 SMART LRR_sd22_2 234 260 - -
Lja1g0999 1211 SMART LRR_sd22_2 403 429 - -
Lja1g0999 1211 SMART LRR_sd22_2 475 504 - -
Lja1g0999 1211 SMART LRR_sd22_2 763 786 - -
Lja1g0999 1211 Gene3D Ribonuclease Inhibitor 375 525 IPR032675 -
Lja1g0999 1211 Gene3D Transferase(Phosphotransferase) domain 1 999 1190 - -
Lja1g0999 1211 PANTHER - 261 1207 - -
Lja1g0999 1211 PANTHER - 187 260 - -
Lja1g0999 1211 PANTHER - 9 173 - -
Lja1g0999 1211 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lja1g0999 1211 Gene3D Phosphorylase Kinase; domain 1 878 998 - -
Lja1g0999 1211 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
Lja1g0999 1211 Gene3D Ribonuclease Inhibitor 225 374 IPR032675 -
Lja1g0999 1211 Gene3D Ribonuclease Inhibitor 526 834 IPR032675 -
Lja1g0999 1211 ProSiteProfiles Leucine-rich repeat profile. 188 209 IPR001611 GO:0005515
Lja1g0999 1211 Gene3D Ribonuclease Inhibitor 136 224 IPR032675 -
Lja1g0999 1211 SUPERFAMILY RNI-like 299 640 - -
Lja1g0999 1211 Pfam Leucine rich repeat 166 221 IPR001611 GO:0005515
Lja1g0999 1211 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Lja1g0999 1211 Pfam Leucine rich repeat 643 703 IPR001611 GO:0005515
Lja1g0999 1211 SUPERFAMILY L domain-like 568 828 - -
Lja1g0999 1211 PRINTS Leucine-rich repeat signature 644 657 - -
Lja1g0999 1211 PRINTS Leucine-rich repeat signature 763 776 - -
Lja1g0999 1211 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lja1g0999 1211 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1044 1056 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0999 Lja-Chr1 9935581 9939858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0999 183 732 Receptor kinase-like Gene Family AT4G08850 34.116 8.55e-78 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g0999 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0999 - - ccaj:109803789 1716.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0999 1 9935581 9939858 Lja1g0999 1 9935581 9939858 ECH