Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0998 ATGGAAGCACGCCCTGCTCTCTCTATTGAAAGATCAAGCCCAATGCAACTCAATAACATAGGAATGTCTGGAGCACTTCCTTCATCATTGCCTGTCCTTCCAATGCCTCTAGAAGAGACGTACCCCAAATTATCTGATTCTCACCCGGCTTTTGTGGAAAAAGAGCTTAATACAAAGCCTTTTATACATTCAAGTCACTTAAGTTCCAGCGGTGCAGTTGGGCATATGTTTTCATCTTCTCCCGGATATTCAACTGATCTTCATCACCCGTCCCTTTCACCCCATGAAAAACACTCTAGAAATGTGCATTTTATGTCACAGTCATTGAGTAACGGGGCTCCATTGCGATCTTATGCTTCAAATAATGGACCAATACCTTCTACAACATCAACCCATTATTCTAATGGAAACAGTGCTTCCTGGCATACAGATTCCCTGCCCAGCTTTCTTGATTTCTCAGCGAATACCTCTGTTGATACTAGTCAAGTAGAGAGCAGTGCCTGCGATATTATGGCAATTGAGGAGTATTCTAAGAGAAATGATTGGCATGAGTGGGCTGATCAGCTAATCAGTGATGATGATACTTTGACTTCCAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGATGGTGGATCGAGTTTCAAAACCATCTTCGCAATATCCGGTAGGAAACCAATCCCAAGCCATTCCACAACTTCCTGCTTCATCTGGAGAACATCATGCTGTTACTGCCCCCTCTTCCTCAGCAAATTCTGCACCTGCCAAACCACGGATGCGTTGGACACCTGAGCTTCATGAAGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGTTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTACAGATAGAAAACTAAGCCCCATTGAAGATATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCCCTACGAATGCAGATGGAGGTTCAGAAGCGATTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATTTTCGAGAAGCAATGCAAATCTGGCGTTGAACCATTTAAGGCATCATCATCTGCCATTGAGAGTGTATCTGGAGTGTCTTCAGATGCCTTAAAAGATTCTCCTGACAAAACCGAATTGGAAGCATCCAAAGCGAACCATTGCAGGTCTGATCAAGCTACTAATGGCAGTACTGTAGTTGACGGAAGCGCCCAGGAAGCGGGTGAGAAGCAGGATGCTCCCGAAAGTCAAGCTTCCGAGAATCCTAAGCAAATTGCTGATGAAGATGGTGCTCAAGCCCCCAAGCGTGCAAGGACAGATGAGTAA 1461 0.4381 MEARPALSIERSSPMQLNNIGMSGALPSSLPVLPMPLEETYPKLSDSHPAFVEKELNTKPFIHSSHLSSSGAVGHMFSSSPGYSTDLHHPSLSPHEKHSRNVHFMSQSLSNGAPLRSYASNNGPIPSTTSTHYSNGNSASWHTDSLPSFLDFSANTSVDTSQVESSACDIMAIEEYSKRNDWHEWADQLISDDDTLTSNWNDLLADNIQDLEPKMVDRVSKPSSQYPVGNQSQAIPQLPASSGEHHAVTAPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGATDRKLSPIEDMSSLDLKTGIEITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMIFEKQCKSGVEPFKASSSAIESVSGVSSDALKDSPDKTELEASKANHCRSDQATNGSTVVDGSAQEAGEKQDAPESQASENPKQIADEDGAQAPKRARTDE* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0998 486 Gene3D - 260 319 - -
Lja1g0998 486 MobiDBLite consensus disorder prediction 246 260 - -
Lja1g0998 486 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 28 486 IPR044848 GO:0003700
Lja1g0998 486 MobiDBLite consensus disorder prediction 407 486 - -
Lja1g0998 486 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 28 486 - -
Lja1g0998 486 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 261 315 IPR006447 GO:0003677
Lja1g0998 486 Pfam Myb-like DNA-binding domain 263 314 IPR001005 -
Lja1g0998 486 MobiDBLite consensus disorder prediction 223 239 - -
Lja1g0998 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 318 IPR017930 -
Lja1g0998 486 MobiDBLite consensus disorder prediction 219 262 - -
Lja1g0998 486 SUPERFAMILY Homeodomain-like 259 315 IPR009057 -
Lja1g0998 486 MobiDBLite consensus disorder prediction 417 431 - -
Lja1g0998 486 Pfam MYB-CC type transfactor, LHEQLE motif 346 393 IPR025756 -
Lja1g0998 486 MobiDBLite consensus disorder prediction 432 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0998 Lja-Chr1 9922014 9928428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0998 1 437 G2-like Transcription Factor Family AT4G28610 47.309 2.64e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g0998 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0998 - - gmx:100810560 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0998 1 9922014 9928428 Lja1g0998 1 9922014 9928428 ECH
Lja1g0998 1 9922014 9928428 Lja5g1592 5 16997732 17001349 PCT