Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0994 ATGTCGAAGCGAGGTCGCGGTGGTTCGGCGGGTAACAAGTTCAGGATGTCACTGGGTCTTCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGAGCGAAGAACCTGTACATCATTTCAGTGAAAGGGATCAAGGGAAGGCTGAACCGTTTGCCTTCTGCTTGCGTCGGTGACATGGTGATGGCGACTGTCAAGAAGGGAAAGCCTGATCTGCGTAAGAAGGTGCTTCCTGCTGTCATCGTTCGTCAGCGCAAGCCTTGGCGCCGAAAGGACGGTGTTTTCATGTATTTCGAAGATAATGCTGGTGTAATTGTGAATCCAAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCAGATCTGTGGCCTAGGATTGCAAGTGCTGCAAATGCTATTGTTTAG 423 0.5154 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0994 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g0994 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g0994 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Lja1g0994 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja1g0994 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Lja1g0994 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lja1g0994 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lja1g0994 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0994 Lja-Chr1 9855217 9856691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0994 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 98.571 3.01e-99 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0994 K02894 - zju:107434236 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0994 1 9855217 9856691 Lja1g0994 1 9855217 9856691 ECH
Lja1g0994 1 9855217 9856691 Lja5g2116 5 28880736 28882074 PCT