Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0993 ATGGCACCCAATCCAAAAGTAATCGCAGCATTTCGTGCAATGGCAAATCTTGGAATTCATGAATCAACAGTGAAACCGGTATTAAAGAAACTACTTAAACTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCAATATTTGAGGAGGATGAAAATAAGGTGCCAGAGCCGGACCAGAATAATAATAGCAAGAAAGTTGATGAACGGGCGGCACATGATGAAGCTCAAGTGCATGATGAGCCATTGCGACCATTGAAGAGGTTGCGCTTAAGAGGCCAAGAGGGTCATTCTTCACGCCTTCTGAGTAACCCTGGCCCCAGTTCTGCTGCCTTTCCATTGAAAACACCTAAATTAGAAGATGACGCAACAATACCTGGAAGTAGTGCAAGGATTGAAGGGCATCAAGTTCAACCACAAGATGCTATTGTTGACAAGGGAAAGCAACCTGTGTCACCTCAAGATATTCCCGGAGGGAGAAGAATTTTATCTAACGGAAATTCCCCTGCTGTGCCATCGTCAAAAAACAAAATGCCTTATCCTTACAATTTTATCATTCCCAAGGATGAGCCTGTAGATGATATACCAGATTATGTGGTTCCCCTTGCAGTGATTCATCCTGAACCAACAAGTGGAGGAGACTTGTCAATGAAGAATGATGCAACTGGAAAGCAAGATGGCCATGGCATAGTGGCATCACAATGCAGAGATGAAGATGTTGAAGGTGAAGAAGTTCTTCCTTCCTTAAATGAAGAAGCGACTTCTAATGCAGACCTAGCCTCATCATCTATGGGAGAGGAGGGATCTGTAAAGAAAGCTGTTGACGTTGCAAAGGAATCTGAGGCAAATGGCGATCTTGTTGTCAGTGGCAATAAAGATTTAGAGATGCACTCTTGCACTTCAAATGGATCACTCAGTGCTAAGCCTTCTACTGCCTTGGTTGCACTTCAAGATCCCTTATCTCCACCTTGTTCGAGTGGTCAGGATGATCTTATGCTAGTTTCCAATAATGTTGGAATGGATGATATCTTAGATCATGATTATGGGAAGGAGCTCAGGGATCCTATATCTCCAAATTCATGTAACTTAGTTGATGCTTCTAAGAATCAGCTTACAAGTAATGATATAAAGGCTGTCTGTGATGTTAATGACCTCACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTAAATAACACTACTGATGATCACCCACCATCCTTTCATTACATTCCCCGAAACCTTGTGTTCCGAGATGCGCATCTTGATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTTTACTTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTCGTTGTGCAAATAAAACTGGCGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGAAGAGTGTATTGCCATGAGCCGCGGCCCTCAAAATTATTTCTACTGCAAAGACTGCCCGTTTGAAAAATCTAAGAATGATGACGGGTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAGGAGTGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAACTTGCAACCTGCAGGTGTTTTTAACTCCAGATGGAAAAGGGTGGGGTCTTCGCACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGTGAATTTGTTGGAGAAATTTTAACGGTCAAGGAGTTGCATGAGAGAAATTTGAAATTTCCCAAAAATGGGAAATATACATATCCAATTTTATTGGATGCTGATTGGGATTCAGGAGTCGTTAAGGATACAAAAGCCCTTTGCTTGTATGCAGCATCATATGGGAATGCTGCTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGACCCTGCTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAATATCAGCACAGGAAGAGCTCACTTGGGATTACAGCATAAACTTTGATGACCATGATCAGCCAGCTGAGTTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGGCCAAACAGGTCCATTAGATCGTCAACTTCAGGATTGTAG 2154 0.4192 MAPNPKVIAAFRAMANLGIHESTVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKVPEPDQNNNSKKVDERAAHDEAQVHDEPLRPLKRLRLRGQEGHSSRLLSNPGPSSAAFPLKTPKLEDDATIPGSSARIEGHQVQPQDAIVDKGKQPVSPQDIPGGRRILSNGNSPAVPSSKNKMPYPYNFIIPKDEPVDDIPDYVVPLAVIHPEPTSGGDLSMKNDATGKQDGHGIVASQCRDEDVEGEEVLPSLNEEATSNADLASSSMGEEGSVKKAVDVAKESEANGDLVVSGNKDLEMHSCTSNGSLSAKPSTALVALQDPLSPPCSSGQDDLMLVSNNVGMDDILDHDYGKELRDPISPNSCNLVDASKNQLTSNDIKAVCDVNDLTKGEERVKISWVNNTTDDHPPSFHYIPRNLVFRDAHLDISLSRIGNEDCCFTCMGNCVLSSKPCRCANKTGGEFAYTAQGLLKEEFLEECIAMSRGPQNYFYCKDCPFEKSKNDDGLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCNLQVFLTPDGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNLKFPKNGKYTYPILLDADWDSGVVKDTKALCLYAASYGNAARFINHRCLDANLIEIPVEVEDPAHHYYHFAFFTSRKISAQEELTWDYSINFDDHDQPAELFQCRCGSKFCRNMKRPNRSIRSSTSGL* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0993 717 ProSiteProfiles SET domain profile. 545 678 IPR001214 GO:0005515
Lja1g0993 717 Gene3D SET domain 368 688 IPR046341 -
Lja1g0993 717 ProSiteProfiles Pre-SET domain profile. 445 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g0993 717 MobiDBLite consensus disorder prediction 58 102 - -
Lja1g0993 717 MobiDBLite consensus disorder prediction 58 181 - -
Lja1g0993 717 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 715 - -
Lja1g0993 717 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 717 IPR025776 -
Lja1g0993 717 CDD SET_SETDB-like 413 678 - -
Lja1g0993 717 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Lja1g0993 717 Gene3D - 1 60 IPR043017 -
Lja1g0993 717 SMART preset_2 389 529 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g0993 717 SMART set_7 545 684 IPR001214 GO:0005515
Lja1g0993 717 MobiDBLite consensus disorder prediction 256 270 - -
Lja1g0993 717 Pfam Pre-SET motif 393 537 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g0993 717 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 715 - -
Lja1g0993 717 SUPERFAMILY SET domain 399 701 IPR046341 -
Lja1g0993 717 MobiDBLite consensus disorder prediction 256 275 - -
Lja1g0993 717 Pfam SET domain 557 677 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0993 Lja-Chr1 9846306 9853449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0993 391 701 Su(var)3-9 homologs AT1G73100 28.963 1.13e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g0993 Pre-SET 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0993 - - gmx:100809678 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0993 1 9846306 9853449 Lja1g0993 1 9846306 9853449 ECH
Lja5g2114 5 28780263 28787299 Lja1g0993 1 9846306 9853449 PCT