LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g0990	ATGGAAGGTGGGGGTAGTTTCAGGATTGGAAATTCATCACTTTGGAGGAACAGTGATGCTGATGAGATCTTCTCTAACTCCTTCCACCAAGAGGAAGATGATGAAGAGGCTCTCAAATGGGATGCCATTCAGAAACTGCCTACATTTACACGTACGAGGAAAGGTTTGTTGACTTCCTCGGAAGGGGAAGCCACTGAGATAGATATCAAGAAACTTGGGTTGCAAGAAAGAAGAGCTTTGCTTGAAAGGCTGGTGAGGCTTCCTGAAGAGGACAATGAGAGGTTTTTGCTGAAGCTCAGACATAGGATTGATAGAGTTGGAATTGACCTTCCCACAATAGAGGTTCGATTTGAGCACTTGAACATTGAAGCAGAAGCTCGTGTAGGAAGTAGAAATTTGCCCACCTTTACTAACTTCACGGTAAATATAGTGGAGAGCTTGTTGAGCTCTCTTCATGTACTTCCAAGTAGAAGACAACATATTAATATTCTCAAGGATGTTAGTGGAATAATAAATTCAGGAAAAACTACACTCCTGTTGGCATTGGCTGGAAAACTTGATCCAAAGTTAAAGTTCACTGGAAAGGTGACTTACAATGGTCATGAGATGAATGAGTTTGTACCCCAAAGAACTGCTGCTTATGTTGATCAAAATGATCTTCACATGGGAGAAATGACTGTAAGAGAAACCTTGGCCTTCTCAGCAAGAGTCCAAGGGGTTGGGCCTCGTAATGAGTTATTAGCAGAACTGTCCAGAAGAGAGAAAGAGGCAAATATCAAGCCTGATCCAGATATTGATGTCTACATGAAGGCTGTAGCAACTGAAGGCCAGAAGGCAAATTTGATAACAGATTATGTCCTCAGGGTTTTGAGACTTGAGGTCTGTGCTGATACAGTTGTAGGAAATGCCATGTTAAGAGGTATCTCAGGAGAGATGCTGGTTGGACCATCAAAAGCTCTTTTCATGGATGAAATATCCACTGGTTTGGATAGCTCAACAACTTACCAAATTGTGAATTCACTCAAGCAATATGTCCAAATTCTCAAAGGAACTGCAGTCATCTCACTCCTGCAGCCAGCACCAGAGACTTACAATCTCTTTGATGACATTGCTTTACTCTCTGATAGTCACATTGTGTACCAAGGTCCCCGCGAAAACGTGCTTGAATTTTTTGAATCAATGGATTTTCAGTGTCCTGAGAGGAAAGGAATTGCAGACTTTTTGCAGGAAGTGACATCAAGGAAAGATCAGGAGCAGTATTGGGCAAACAAAGAGCATCCTTATAGATTTACATTTCATGTTGGAAGAAGGCTCAGTGATGAACTTGCCACTGAATTTGACAAGTCTAAGAGCCACCCTGCTGCTCTGACAACCAAAAAGTATGGTGTGGGAAAATGGGAGCTGTTAAAAGCTTGCTTATCAAGAGAATATTTACTCATGAAGAGAAATTCATTTGTCTACATCTTCAAGCTTTGCCAACTTGCTGTGATGGCAATGATTGCCATGACCATTTTCCTCAGGACTGAGATGCATAGAGACTCAGTGACTCATGGAGGTATATATGTAGGTGCATTGTTCTATGCCGTGGTAGTGACCATGTTCAATGGAATGGCAGAACTTTCCATGGTTGTTTCAAGGCTTCCTATTTTCTACAAGCAAAGGGAATATTTCTTTTTCCCTCCATGGGCCTATGCTCTCCCTTCATGGATCCTGAAAATTCCCATGACTTTTGTGGAAGTTGGTGTTTGGGTATTCCTCACCTACTATGTCATTGGCTTTGATCCACATGTTGGAAGATTGTTTAGGCAGTACCTTCTTCTGGTACTAGTAAAGCAGATGGCTTCTGGATTATTCAGATTCATTGCAGCAGTTGGGAGGGAATTGACAGTGGCTCTAACATTTGGGTCTTTTGCACTTGCCATCCTTTTTTCTATGAGTGGTTTTGTCTTATCAAAAGACAATATAAAAAAATGGTGGCTATGGGGCTTCTGGATATCACCTATGATGTATGGACAGAATGCCATGGTAAATAATGAGTTCCTTGGAGATAAATGGAGACATGTTCTACCAAACTCAACTGAGCCTCTAGGAGTTGAAGTTTTGAAATCTCGCGGGTTCTTTACTCAATCATACTGGTATTGGATAGGTGTTGGGGCCATGGTTGGATACACATTGTTTTTCAACTTTGGCTATATCCTTGCTCTGACTTTCTTGAACCTGAGAAACGGTGAAAGCTTTAGCGGGAGCACCTCTCCTAGTACTGCATCCACTAGACAAGTAGCAATTGTTGCAGAGGCAAATCATAACAGAAAAAGAGGAATGGTTCTTTCTTTTGAACCACATTCCATCACATTTGATGAAGTAACGTATGCTGTTGACATGCCACAGGAAATGAGGAACAGCGGTGTTTCTGAGGATAGGCTAGTTCTTCTGAAGGGTGTTAGTGGAGCTTTCAGACCAGGTGTTCTCACTGCACTGATGGGTGTCACAGGTGCTGGCAAAACAACTCTGATGGATGTCCTTGCTGGTAGAAAAACTGGGGGCTATATTGGAGGGAACATCACAGTCTCTGGGCATCCAAAGAAGCATGAAACATTTGCTAGGATTTCTGGATACCGTGAGCAAAATGATATTCATTCTCCTCATGTTACTGTGTATGAATCCTTGCTCTATTCGGCGTGGCTTCGATTGTCCCCTGACACTGATGCTGAAACCAGGAAGATGTTCATTGAGGAAGTCATGGAGCTTGTGGAACTGAAACCACTAAGGCATGCACTAGTTGGATTACCTGGCGTGAATGGCCTATCAACAGAGCAAAGGAAAAGGTTGACTATTGCAGTTGAACTTGTGGCAAATCCTTCTATAATATTCATGGATGAACCAACTTCTGGGCTTGATGCAAGAGCAGCTGCTATTGTAGTGAGAACAGTTAGGAACACAGTGGACACTGGAAGAACTGTTGTCTGTACCATCCATCAGCCTAGCATTGATATATTTGAATCCTTTGATGAGCTTTTTCTAATGAAGCAAGGAGGAAAAGAAATGTATGTGGGGACACTTGGACATCATTCTTCCCAATTAATTAGTTACTTTGAGGGAATTCAAGGTGTCAATAAGATTAAAGATGGCTATAATCCAGCAACATGGATGTTGGAAGTTACTTCCTCGGCTAAAGAAATGGAACTGGAGGTTGATTTTGCTGATGTGTACAAAAGTTCAGAGTTATACAGGAGAAACAAAGAGCTCATTAAAGAATTGAGCACTCCAGGTCCTGGTTCAAAAGACCTCTATTTTCCTTCACAGCATTCAAGGTCCTTTATCACCCAATTCATGGCTTGTTTATGGAAACAACACTGGTCTTACTGGCGCAACCCTATATACACTGCCATAAGGTTTCTTTACTCAACTGCTGTAGCTGTTTTGCTTGGGAGCATGTTTTGGGACCTTGGCTCCAACATTGAAAAGCAACAAGATCTATTTAATTCCATGGGGTCCATGTATGCTGCTGTTCTCCTCTTTGGCATCAAGAATGCTAATGCAGTGCAGCCAGTGGTTGTTGTTGAGAGAACAGTCTTTTATAGAGAAAGAGCAGCTGGAATGTATTCAGCTTTGCCATATGCTTTTGCTCAGGTTCTAATTGAGCTCCCATATGTGCTTGTACAAGCTATAGTTTATGGCTGTATAGTTTATGCAATGATTGGTTATGAATGGACTGTGGCTAAAGTTTTCTGGTACCTCTTCTTCATGTATTTCACATTCCTGTACTTCACCTACTATGGCATGATGGCAGTGGCTGTGACCCCAAACCAACACATATCAACTATAGTTTCCTCTGCATTCTATTCAGTGTGGAATCTCTTCTCAGGATTCATAGTCCCAAAACCAAGGGTCCCAGTTTGGTGGAGGTGGTACTATTGGGCTAATCCAGTGGCTTGGAGTTTGTATGGATTGGTAGCTTCACAGTATGGAGATTTAAAACACAATATTGAATCCAGTGATGGAACACAAATATCAGTTGAAGGCTTTGTGAGAAATTACTTTGGTTTCAAGCATGATTTTCTTGGTGTGGTTGCAGCTGTCATTGTTGCATTCCCAGTAGTTTTTGCATTGGTCTTTGCCATATCAATCAAGATGTATAATTTCCAGCGGCGCTAA	4155	0.4183	MEGGGSFRIGNSSLWRNSDADEIFSNSFHQEEDDEEALKWDAIQKLPTFTRTRKGLLTSSEGEATEIDIKKLGLQERRALLERLVRLPEEDNERFLLKLRHRIDRVGIDLPTIEVRFEHLNIEAEARVGSRNLPTFTNFTVNIVESLLSSLHVLPSRRQHINILKDVSGIINSGKTTLLLALAGKLDPKLKFTGKVTYNGHEMNEFVPQRTAAYVDQNDLHMGEMTVRETLAFSARVQGVGPRNELLAELSRREKEANIKPDPDIDVYMKAVATEGQKANLITDYVLRVLRLEVCADTVVGNAMLRGISGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLKQYVQILKGTAVISLLQPAPETYNLFDDIALLSDSHIVYQGPRENVLEFFESMDFQCPERKGIADFLQEVTSRKDQEQYWANKEHPYRFTFHVGRRLSDELATEFDKSKSHPAALTTKKYGVGKWELLKACLSREYLLMKRNSFVYIFKLCQLAVMAMIAMTIFLRTEMHRDSVTHGGIYVGALFYAVVVTMFNGMAELSMVVSRLPIFYKQREYFFFPPWAYALPSWILKIPMTFVEVGVWVFLTYYVIGFDPHVGRLFRQYLLLVLVKQMASGLFRFIAAVGRELTVALTFGSFALAILFSMSGFVLSKDNIKKWWLWGFWISPMMYGQNAMVNNEFLGDKWRHVLPNSTEPLGVEVLKSRGFFTQSYWYWIGVGAMVGYTLFFNFGYILALTFLNLRNGESFSGSTSPSTASTRQVAIVAEANHNRKRGMVLSFEPHSITFDEVTYAVDMPQEMRNSGVSEDRLVLLKGVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKTGGYIGGNITVSGHPKKHETFARISGYREQNDIHSPHVTVYESLLYSAWLRLSPDTDAETRKMFIEEVMELVELKPLRHALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVVRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKQGGKEMYVGTLGHHSSQLISYFEGIQGVNKIKDGYNPATWMLEVTSSAKEMELEVDFADVYKSSELYRRNKELIKELSTPGPGSKDLYFPSQHSRSFITQFMACLWKQHWSYWRNPIYTAIRFLYSTAVAVLLGSMFWDLGSNIEKQQDLFNSMGSMYAAVLLFGIKNANAVQPVVVVERTVFYRERAAGMYSALPYAFAQVLIELPYVLVQAIVYGCIVYAMIGYEWTVAKVFWYLFFMYFTFLYFTYYGMMAVAVTPNQHISTIVSSAFYSVWNLFSGFIVPKPRVPVWWRWYYWANPVAWSLYGLVASQYGDLKHNIESSDGTQISVEGFVRNYFGFKHDFLGVVAAVIVAFPVVFALVFAISIKMYNFQRR*	1385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g0990	1384	Pfam	ABC-transporter N-terminal	88	139	IPR029481	-
	Lja1g0990	1384	Gene3D	-	152	433	IPR027417	-
	Lja1g0990	1384	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	161	400	IPR027417	-
	Lja1g0990	1384	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	798	1018	IPR027417	-
	Lja1g0990	1384	Pfam	Plant PDR ABC transporter associated	685	739	IPR013581	-
	Lja1g0990	1384	PANTHER	DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN	2	1384	-	-
	Lja1g0990	1384	Pfam	ABC transporter	811	963	IPR003439	GO:0005524
	Lja1g0990	1384	Pfam	ABC-2 type transporter	468	680	IPR013525	GO:0016020\|GO:0140359
	Lja1g0990	1384	Pfam	ABC-2 type transporter	1108	1322	IPR013525	GO:0016020\|GO:0140359
	Lja1g0990	1384	Gene3D	-	796	1028	IPR027417	-
	Lja1g0990	1384	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	783	1036	IPR003439	GO:0005524
	Lja1g0990	1384	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	115	400	IPR003439	GO:0005524
	Lja1g0990	1384	PANTHER	ATP-BINDING CASSETTE TRANSPORTER	2	1384	-	-
	Lja1g0990	1384	SMART	AAA_5	159	384	IPR003593	-
	Lja1g0990	1384	SMART	AAA_5	820	1012	IPR003593	-
	Lja1g0990	1384	Pfam	ABC-2 type transporter	358	455	IPR043926	GO:0140359
	Lja1g0990	1384	CDD	ABCG_PDR_domain2	780	1018	IPR034003	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g0990	Lja-Chr1	9815736	9824772	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g0990	821	1023	Calmodulin-binding Proteins	AT2G36910	24.286	9.16e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g0990	K08711		-	gmx:100812888	2162.88